[Home] | [Total List]

[181758_at] 7TM receptor, sre family

Description F54F11.3 /REP_DB=WormBase Gene ID /WP=CE11097 /TR=O02275 /GB=CAB05740.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 20      6grp_cgc > 52      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 48
(3)
A 		5.2
(-3)
A 		37.2
(1.5)
A 		47.7
(3)
A 		43
B 28.1
(-1.1)
A 		38.8
(0.8)
A 		16.6
(-3)
A 		52
(3)
A 		35
C 50.1
(-0.9)
A 		80.8
(3)
A 		33.6
(-3)
A 		55.8
(-0.2)
A 		47
avr 42.1
(0.4) 		41.6
(0.3) 		29.1
(-3) 		51.8
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 27
(0.1)
A 		23
(-0.7)
A 		31.7
(1.1)
A 		41.3
(3)
A 		29.3
(0.6)
A 		11.6
(-3)
A 		30
B 19.2
(-2.3)
A 		47.6
(3)
A 		15.4
(-3)
A 		41.5
(1.9)
A 		36
(0.8)
A 		35.1
(0.7)
A 		32
C 49.3
(2.3)
A 		54.4
(3)
A 		23.4
(-1)
A 		7.4
(-3)
A 		24.6
(-0.8)
A 		26
(-0.6)
A 		47
avr 31.8
(-0.3) 		41.7
(3) 		23.5
(-3) 		30.1
(-0.8) 		30
(-0.9) 		24.2
(-2.8) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 17.5
(3)
A 		1.1
(-3)
A 		9.7
(0.1)
A 		7
(-0.8)
A 		16
B 9
(1.3)
A 		9.6
(1.8)
A 		3.8
(-3)
A 		11.1
(3)
A 		7
C 16.6
(0.1)
A 		23.2
(3)
A 		11.7
(-2)
A 		9.4
(-3)
A 		14
avr 14.4
(3) 		11.3
(-0.1) 		8.4
(-3) 		9.2
(-2.2) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 5
(-1.3)
A 		8.2
(1.2)
A 		6.9
(0.2)
A 		10.5
(3)
A 		8.8
(1.7)
A 		2.8
(-3)
A 		8
B 6.7
(-1.5)
A 		15.8
(3)
A 		3.7
(-3)
A 		11
(0.6)
A 		14.6
(2.4)
A 		13.1
(1.7)
A 		12
C 18.3
(3)
A 		16.6
(2.4)
A 		6
(-1.4)
A 		1.5
(-3)
A 		8
(-0.7)
A 		8.7
(-0.4)
A 		17
avr 10
(0.4) 		13.5
(3) 		5.5
(-3) 		7.7
(-1.4) 		10.5
(0.8) 		8.2
(-1) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181758_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3682
Sequence Type Exemplar sequence
Representative Public ID F54F11.3 NCBI
Target Description F54F11.3 /REP_DB=WormBase Gene ID /WP=CE11097 /TR=O02275 /GB=CAB05740.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064442(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064442 NCBI Caenorhabditis elegans Serpentine Receptor, class E (epsilon) family member (sre-45) (sre-45) mRNA, complete cds. 11/11 None
F54F11.3 ENSEMBL cdna:known chromosome:CEL140:II:13517808:13522821:1 gene:F54F11.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024040 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13517804-13521006(+) 96.38 100.0
Public Domain and Genome References
Gene Title 7TM receptor, sre family
Gene Symbol sre-45
Ensembl F54F11.3
Entrez Gene 186258 Entrez gene
SwissProt O02275 EMBL-EBI
WormBase CE32897 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7606 sensory perception of chemical stimulus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05740 Hypothetical protein F54F11.3 [Caenorhabditis elegans] ref|NP_496843.2| Serpentine Receptor, class E (epsilon) family member (sre-45) [Caenorhabditis elegans] sp|O02275|SRE45_CAEEL Serpentine receptor class epsilon-45 (Protein sre-45) 0.0
blast CAE73336 Hypothetical protein CBG20765 [Caenorhabditis briggsae] 1.0E-120
blast CAE73318 Hypothetical protein CBG20745 [Caenorhabditis briggsae] 5.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 4.3E-103
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496843.2 8 2-21,36-58,65-87,127-149,169-191,195-217,258-280,290-312
F54F11.3 8 2-21,36-58,65-87,127-149,169-191,195-217,258-280,290-312
Sequence
Target Sequence 
>C. ELEGANS:181758_AT
aatctttcaacatttcccaatttcttcctcggtggatttctcaaatggcattatattctc
tcaatgataactactctcctggtaatgtcaatcgaaagatcatttgcctgttattttctg
accgattatgagaaaaagtcacggaatgggttattcttcatgttggttgttggtcaaaca
tctacgaatttagtgatgggttatttatttttctttaacgccgcacattttgcagttggt
tttagtattattctatcgacgaatattattgcgatggggatattcacctacgtaaaacat
gtgaatcgtcaagtgaatcgagcaatcgaagatttctcaaatccttcgctatactgtctt
ccggcaagatttcaagttcgcgagaatgtccggtgctttcaaatgataacgaaagtaatt
cacgcaggactttttctgattcttaccgcctgttttgtcaatttattcatgtatctcgag
ttgacgcctggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCTTTCAACATTTCCCAATTTCT 592 169 412 Antisense
ATTTCTTCCTCGGTGGATTTCTCAA 118 17 431 Antisense
GATAACTACTCTCCTGGTAATGTCA 413 423 477 Antisense
TGCCTGTTATTTTCTGACCGATTAT 304 583 516 Antisense
AACGCCGCACATTTTGCAGTTGGTT 83 147 628 Antisense
GCGATGGGGATATTCACCTACGTAA 437 287 682 Antisense
GATTTCTCAAATCCTTCGCTATACT 195 429 742 Antisense
TTCGCGAGAATGTCCGGTGCTTTCA 388 697 788 Antisense
CAGGACTTTTTCTGATTCTTACCGC 579 201 836 Antisense
TTCTTACCGCCTGTTTTGTCAATTT 592 689 851 Antisense
CATGTATCTCGAGTTGACGCCTGGC 586 209 879 Antisense
Sequence Source Affymetrix Proprietary Database