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[181756_at]

Description C04G6.6 /REP_DB=WormBase Gene ID /WP=CE06767 /TR=Q17640 /GB=AAA98014.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 47      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 21.3
(1.9)
A 		24.2
(3)
A 		8.9
(-2.9)
A 		8.7
(-3)
A 		16
B 53.9
(3)
M 		3.8
(-3)
A 		7.2
(-2.6)
A 		10.5
(-2.2)
A 		50
C 13.7
(2)
A 		3.7
(-3)
A 		13.6
(1.9)
A 		15.8
(3)
A 		12
avr 29.6
(3) 		10.6
(-2.8) 		9.9
(-3) 		11.7
(-2.5) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 9.4
(-2.4)
A 		42.3
(1.7)
A 		52.6
(3)
A 		7.9
(-2.6)
A 		4.9
(-3)
A 		12.8
(-2)
A 		48
B 3.6
(-2.8)
A 		3
(-3)
A 		24.1
(3)
A 		8.1
(-1.5)
A 		18.4
(1.4)
A 		3.2
(-2.9)
A 		21
C 16.6
(1.8)
A 		7.9
(-1.5)
A 		19.8
(3)
A 		14.7
(1.1)
A 		17.1
(2)
A 		4
(-3)
A 		16
avr 9.9
(-2.2) 		17.7
(-0.4) 		32.2
(3) 		10.2
(-2.2) 		13.5
(-1.4) 		6.7
(-3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 7.7
(3)
A 		5.3
(0.8)
A 		2.3
(-2.1)
A 		1.3
(-3)
A 		6
B 17.2
(3)
M 		0.9
(-3)
A 		1.7
(-2.7)
A 		2.2
(-2.5)
A 		16
C 4.5
(2.7)
A 		1.1
(-3)
A 		4.7
(3)
A 		2.7
(-0.3)
A 		4
avr 9.8
(3) 		2.4
(-2.8) 		2.9
(-2.4) 		2.1
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 1.7
(-2.9)
A 		15
(3)
A 		11.4
(1.4)
A 		2
(-2.8)
A 		1.5
(-3)
A 		3.1
(-2.3)
A 		14
B 1.2
(-2.8)
A 		1
(-3)
A 		5.8
(1.4)
A 		2.1
(-2)
A 		7.5
(3)
A 		1.2
(-2.8)
A 		7
C 6.2
(3)
A 		2.4
(-1.8)
A 		5
(1.5)
A 		3
(-1)
A 		5.5
(2.1)
A 		1.4
(-3)
A 		5
avr 3
(-1.8) 		6.1
(1.6) 		7.4
(3) 		2.4
(-2.5) 		4.8
(0.2) 		1.9
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181756_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4755
Sequence Type Exemplar sequence
Representative Public ID C04G6.6 NCBI
Target Description C04G6.6 /REP_DB=WormBase Gene ID /WP=CE06767 /TR=Q17640 /GB=AAA98014.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062541(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062541 NCBI Caenorhabditis elegans C04G6.6 (C04G6.6) mRNA, complete cds. 11/11 None
SNAP00000008310 ENSEMBL cdna:SNAP chromosome:CEL140:II:5099420:5099731:-1 11/11 None
GENEFINDER00000008318 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5099420:5099731:-1 11/11 None
C04G6.6 ENSEMBL cdna:known chromosome:CEL140:II:5099420:5099731:-1 gene:C04G6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5099417-5099729(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C04G6.6
Entrez Gene 182238 Entrez gene
SwissProt Q17640 EMBL-EBI
WormBase CE06767 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA98014 Hypothetical protein C04G6.6 [Caenorhabditis elegans] ref|NP_494942.1| C04G6.6 [Caenorhabditis elegans] 7.0E-17
Sequence
Target Sequence 
>C. ELEGANS:181756_AT
agcgggatgatgactcgagcactgtggcggtgattcgtggagctggaaagaaatctaaga
aaacggcgagcaaggggccaaagaaggagctcaaaaatccgaagaaaaagccaaagaaga
atctgaaaaacaaaaaatcgagaaattccgagtcagaaatgtcggattccggaaaaacga
cggactgtgaaatggagatcagcgacgcagatgattatccaccagtgaagagatatccaa
atcgtcgtcgatcaccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCGGGATGATGACTCGAGCACTGT 317 81 26 Antisense
GACTCGAGCACTGTGGCGGTGATTC 263 375 37 Antisense
TGTGGCGGTGATTCGTGGAGCTGGA 96 555 48 Antisense
GAAAACGGCGAGCAAGGGGCCAAAG 234 149 84 Antisense
GCAAGGGGCCAAAGAAGGAGCTCAA 179 315 95 Antisense
GAGTCAGAAATGTCGGATTCCGGAA 565 399 175 Antisense
GAAAAACGACGGACTGTGAAATGGA 310 351 197 Antisense
GTGAAATGGAGATCAGCGACGCAGA 530 481 212 Antisense
GCGACGCAGATGATTATCCACCAGT 704 287 227 Antisense
TCCACCAGTGAAGAGATATCCAAAT 606 589 243 Antisense
TATCCAAATCGTCGTCGATCACCAC 224 657 259 Antisense
Sequence Source Affymetrix Proprietary Database