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[181755_at] 7TM chemoreceptor, srz family

Description F56D6.4 /REP_DB=WormBase Gene ID /WP=CE17908 /TR=O61838 /GB=AAC17548.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 08      6grp_cgc > 58      6grp_cgc_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 35
(-2.1)
A 		30.5
(-3)
A 		39.7
(-1.1)
A 		59.8
(3)
A 		29
B 40.1
(0.3)
A 		22.5
(-3)
A 		54.9
(3)
A 		25.2
(-2.5)
A 		32
C 24.2
(-2.6)
A 		44.3
(-0.6)
A 		20.7
(-3)
A 		78.5
(3)
A 		58
avr 33.1
(-2.8) 		32.4
(-3) 		38.4
(-1.4) 		54.5
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 32.6
(1.7)
A 		24.9
(-3)
A 		34.7
(3)
A 		33.8
(2.4)
A 		28
(-1.1)
A 		34.1
(2.6)
A 		10
B 24.2
(-0.2)
A 		23.2
(-0.4)
A 		47
(3)
A 		4.9
(-3)
A 		28.1
(0.3)
A 		40.2
(2)
A 		42
C 15.9
(-1.5)
A 		54.7
(3)
P 		2.6
(-3)
A 		47.8
(2.2)
A 		46
(2)
A 		39.3
(1.2)
A 		52
avr 24.2
(-3) 		34.3
(1.4) 		28.1
(-1.3) 		28.8
(-1) 		34
(1.3) 		37.9
(3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 12.7
(3)
A 		6.6
(-3)
A 		10.4
(0.7)
A 		8.8
(-0.8)
A 		6
B 12.8
(3)
A 		5.6
(-2.8)
A 		12.7
(2.9)
A 		5.4
(-3)
A 		7
C 8
(-2.2)
A 		12.7
(2.5)
A 		7.2
(-3)
A 		13.2
(3)
A 		6
avr 11.2
(3) 		8.3
(-3) 		10.1
(0.7) 		9.1
(-1.3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 6
(-3)
A 		8.9
(3)
A 		7.6
(0.3)
A 		8.6
(2.4)
A 		8.5
(2.2)
A 		8.3
(1.8)
A 		3
B 8.4
(0.1)
A 		7.7
(-0.2)
A 		11.4
(1.4)
A 		1.3
(-3)
A 		11.4
(1.4)
A 		15
(3)
A 		14
C 5.9
(-1.1)
A 		16.7
(3)
P 		0.7
(-3)
A 		9.6
(0.3)
A 		14.9
(2.3)
A 		13.2
(1.7)
A 		16
avr 6.8
(-2.7) 		11.1
(1.8) 		6.6
(-2.9) 		6.5
(-3) 		11.6
(2.4) 		12.2
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181755_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10716
Sequence Type Exemplar sequence
Representative Public ID F56D6.4 NCBI
Target Description F56D6.4 /REP_DB=WormBase Gene ID /WP=CE17908 /TR=O61838 /GB=AAC17548.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068035(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068035 NCBI Caenorhabditis elegans Serpentine Receptor, class Z family member (srz-19) (srz-19) mRNA, complete cds. 11/11 None
F56D6.4 ENSEMBL cdna:known chromosome:CEL140:IV:3919800:3921607:1 gene:F56D6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3918459-3921613(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srz family
Gene Symbol srz-19
Ensembl F56D6.4
Entrez Gene 177150 Entrez gene
SwissProt Q8ITX5 EMBL-EBI
WormBase CE37381 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN73862 Serpentine receptor, class z protein 19 [Caenorhabditis elegans] ref|NP_500436.2| Serpentine Receptor, class Z family member (srz-19) [Caenorhabditis elegans] 0.0
blast AAN73863 Serpentine receptor, class z protein 20 [Caenorhabditis elegans] ref|NP_500435.2| Serpentine Receptor, class Z family member (srz-20) [Caenorhabditis elegans] 6.0E-88
blast AAU05587 Serpentine receptor, class z protein 67 [Caenorhabditis elegans] ref|NP_001021965.1| Serpentine Receptor, class Z family member (srz-67) [Caenorhabditis elegans] 1.0E-47
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 9.0E-45
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500436.2 7 31-53,73-95,110-132,162-184,197-219,240-262,267-289
F56D6.4 7 31-53,73-95,110-132,162-184,197-219,240-262,267-289
Sequence
Target Sequence 
>C. ELEGANS:181755_AT
tgctatttctgttggcagtttccagatttacaatttatttttggccgaccactgaaaaag
tagtcaagattttacaaaccaatggacacaagagagttcactatttgtacctagcatttg
tcatcaaaacgttctttttctttcttgcaatcatttatattggtgcgcgcaaaaaaaagc
tctggtatttggaacctgcagttgtgatcaatcaaattttgttacacatattgatttttg
tgtctggatttctttacattccaataataataagtgtacgaaaattggctcacttggcat
cagctcaacagaataatccacaaagatacatactatggcaactgattagtgtactaatta
ttaaattgataacgtttccctttgtattgaacggtcttgtaagaatcgattattttgtgg
tcaccgtcccgctcgattgttttttgctacctgtactagttcaaatatcgtacctgggat
gcaacaaacggaatgtgacaactttgctcggttcgtttcgtttgaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTATTTCTGTTGGCAGTTTCCAG 200 579 314 Antisense
GAGAGTTCACTATTTGTACCTAGCA 467 395 405 Antisense
TTCTTTTTCTTTCTTGCAATCATTT 34 691 445 Antisense
AGCTCTGGTATTTGGAACCTGCAGT 279 79 491 Antisense
GATTTTTGTGTCTGGATTTCTTTAC 168 429 546 Antisense
AAATTGGCTCACTTGGCATCAGCTC 534 115 595 Antisense
ATTGATAACGTTTCCCTTTGTATTG 657 1 678 Antisense
TCGATTATTTTGTGGTCACCGTCCC 664 247 719 Antisense
GTTTTTTGCTACCTGTACTAGTTCA 598 447 752 Antisense
GAATGTGACAACTTTGCTCGGTTCG 250 333 804 Antisense
TTTGCTCGGTTCGTTTCGTTTGAAG 240 669 816 Antisense
Sequence Source Affymetrix Proprietary Database