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[181754_at]

Description C30G4.5 /REP_DB=WormBase Gene ID /WP=CE06901 /TR=Q18334 /GB=AAA93424.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 37      6grp_total > 92      4grp_total > 42      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 84.2
(1.8)
P 		87.3
(2.2)
P 		51.8
(-3)
P 		92.4
(3)
A 		41
B 30.2
(-3)
A 		109.6
(3)
P 		75.8
(0.4)
P 		59.3
(-0.8)
P 		79
C 46
(-3)
P 		80.5
(1.3)
P 		94
(3)
P 		74.5
(0.6)
P 		48
avr 53.5
(-3) 		92.5
(3) 		73.9
(0.1) 		75.4
(0.4) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 84.2
(1.4)
P 		64
(0)
P 		90.2
(1.8)
P 		108.9
(3)
P 		84.4
(1.4)
P 		18.4
(-3)
A 		91
B 32.2
(-2.8)
A 		40.9
(-2.1)
P 		38.7
(-2.3)
P 		61.7
(-0.6)
P 		112.2
(3)
P 		29
(-3)
A 		83
C 42.5
(-1.4)
M 		57.8
(0.2)
P 		68.7
(1.4)
P 		63.7
(0.9)
P 		83.9
(3)
P 		27.4
(-3)
A 		57
avr 53
(-0.5) 		54.2
(-0.4) 		65.9
(0.6) 		78.1
(1.7) 		93.5
(3) 		24.9
(-3) 		69
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 30.7
(3)
P 		18.9
(-1.1)
P 		13.6
(-3)
P 		13.5
(-3)
A 		17
B 9.6
(-3)
A 		27.1
(3)
P 		17.6
(-0.3)
P 		12.6
(-2)
P 		18
C 15.2
(-2.2)
P 		23.1
(0.1)
P 		32.8
(3)
P 		12.6
(-3)
P 		20
avr 18.5
(0.3) 		23
(3) 		21.3
(2) 		12.9
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 15.5
(-0.1)
P 		22.8
(1.8)
P 		19.7
(0.9)
P 		27.6
(3)
P 		25.5
(2.5)
P 		4.5
(-3)
A 		23
B 11.2
(-2.7)
A 		13.6
(-2.3)
P 		9.4
(-3)
P 		16.3
(-1.9)
P 		45.6
(3)
P 		10.8
(-2.8)
A 		36
C 15.7
(-0.8)
M 		17.6
(-0.2)
P 		17.5
(-0.2)
P 		12.8
(-1.8)
P 		27.2
(3)
P 		9.2
(-3)
A 		18
avr 14.1
(-1.6) 		18
(-0.6) 		15.5
(-1.2) 		18.9
(-0.4) 		32.8
(3) 		8.2
(-3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181754_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17351
Sequence Type Exemplar sequence
Representative Public ID C30G4.5 NCBI
Target Description C30G4.5 /REP_DB=WormBase Gene ID /WP=CE06901 /TR=Q18334 /GB=AAA93424.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078358(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078358 NCBI Caenorhabditis elegans C30G4.5 (C30G4.5) mRNA, complete cds. 11/11 None
GENEFINDER00000042127 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17065015:17072094:-1 9/11 None
SNAP00000042122 ENSEMBL cdna:SNAP chromosome:CEL140:X:17071794:17072094:-1 11/11 None
C30G4.5 ENSEMBL cdna:known chromosome:CEL140:X:17071794:17072094:-1 gene:C30G4.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17071793-17072094(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C30G4.5
Entrez Gene 183058 Entrez gene
SwissProt Q18334 EMBL-EBI
WormBase CE06901 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE69712 Hypothetical protein CBG15981 [Caenorhabditis briggsae] 5.0E-82
blast T15722 hypothetical protein C30G4.4 - Caenorhabditis elegans 3.0E-52
blast AAU05585 Hypothetical protein C30G4.4a [Caenorhabditis elegans] ref|NP_001024437.1| C30G4.4a [Caenorhabditis elegans] 1.0E-48
blast AAA93424 Hypothetical protein C30G4.5 [Caenorhabditis elegans] ref|NP_510759.1| C30G4.5 [Caenorhabditis elegans] 1.0E-37
blast CAE69712 Hypothetical protein CBG15981 [Caenorhabditis briggsae] 7.0E-23
Sequence
Target Sequence 
>C. ELEGANS:181754_AT
gctgctttattcaacgagtcactgcgaaaggtcaacgagcaacaacctccaactataatt
gaggaagacgaaacaccaaagcgtgcaaatcggccgccagatttgcagggattttccatt
ctcgacgagaagtggaggagtagctgttcggatgactcggacgattcgcttcccgtggga
agttatattagtacaggtcagtgcttttttaacactcacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGCTTTATTCAACGAGTCACTGC 531 295 16 Antisense
GAGTCACTGCGAAAGGTCAACGAGC 516 399 31 Antisense
AAGGTCAACGAGCAACAACCTCCAA 647 157 43 Antisense
ACCAAAGCGTGCAAATCGGCCGCCA 289 85 90 Antisense
CGCCAGATTTGCAGGGATTTTCCAT 196 257 110 Antisense
GGGATTTTCCATTCTCGACGAGAAG 546 493 123 Antisense
GTGGAGGAGTAGCTGTTCGGATGAC 637 489 147 Antisense
GTTCGGATGACTCGGACGATTCGCT 307 443 161 Antisense
GACGATTCGCTTCCCGTGGGAAGTT 327 379 175 Antisense
ATATTAGTACAGGTCAGTGCTTTTT 155 19 200 Antisense
GTCAGTGCTTTTTTAACACTCACCA 138 467 212 Antisense
Sequence Source Affymetrix Proprietary Database