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[181753_at]

Description F36H5.6 /REP_DB=WormBase Gene ID /WP=CE09963 /TR=P91292 /GB=AAK31517.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 56      6grp_cgc > 87      6grp_cgc_sub > 05      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 25
(3)
A 		10.3
(-2.9)
A 		16.6
(-0.4)
A 		10.1
(-3)
A 		15
B 6.7
(-3)
A 		38.4
(0.7)
A 		58.3
(3)
A 		10.3
(-2.6)
A 		52
C 14
(1.4)
A 		15.8
(3)
A 		9.3
(-2.9)
A 		9.2
(-3)
A 		7
avr 15.2
(-1.3) 		21.5
(0.8) 		28.1
(3) 		9.9
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 629
1 2 3 4 5 6 range
A 9.5
(-2.9)
A 		8.7
(-2.9)
A 		2.5
(-3)
A 		414.9
(0.9)
P 		631.1
(3)
P 		178.8
(-1.3)
P 		629
B 31.3
(-2.7)
A 		8.4
(-3)
A 		17.6
(-2.9)
A 		434.3
(1.7)
P 		549.4
(3)
P 		186.3
(-1)
P 		541
C 42.3
(-2.6)
A 		11.9
(-3)
A 		8.6
(-3)
A 		515.3
(2.3)
P 		584.9
(3)
P 		187.6
(-1.1)
P 		576
avr 27.7
(-2.8) 		9.7
(-3) 		9.6
(-3) 		454.8
(1.6) 		588.5
(3) 		184.2
(-1.2) 		579
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 9.1
(3)
A 		2.2
(-2.4)
A 		4.3
(-0.8)
A 		1.5
(-3)
A 		8
B 2.1
(-3)
A 		9.5
(0.9)
A 		13.5
(3)
A 		2.2
(-2.9)
A 		11
C 4.6
(3)
A 		4.5
(2.8)
A 		3.2
(0.2)
A 		1.6
(-3)
A 		3
avr 5.3
(1) 		5.4
(1.2) 		7
(3) 		1.8
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 223
1 2 3 4 5 6 range
A 1.8
(-3)
A 		3.1
(-2.9)
A 		0.5
(-3)
A 		105.2
(0.3)
P 		190.4
(3)
P 		43.5
(-1.6)
P 		190
B 10.9
(-2.8)
A 		2.8
(-3)
A 		4.3
(-3)
A 		115
(0.1)
P 		223.2
(3)
P 		69.5
(-1.2)
P 		220
C 15.7
(-2.6)
A 		3.6
(-3)
A 		2.2
(-3)
A 		103.6
(0.3)
P 		189.3
(3)
P 		62.8
(-1.1)
P 		187
avr 9.5
(-2.8) 		3.2
(-3) 		2.3
(-3) 		107.9
(0.2) 		201
(3) 		58.6
(-1.3) 		199
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181753_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4919
Sequence Type Exemplar sequence
Representative Public ID F36H5.6 NCBI
Target Description F36H5.6 /REP_DB=WormBase Gene ID /WP=CE09963 /TR=P91292 /GB=AAK31517.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061665(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061665 NCBI Caenorhabditis elegans C-type LECtin family member (clec-19) (clec-19) mRNA, complete cds. 11/11 None
SNAP00000028512 ENSEMBL cdna:SNAP chromosome:CEL140:II:1744622:1745862:1 11/11 None
GENEFINDER00000028531 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1744486:1745862:1 11/11 None
F36H5.6 ENSEMBL cdna:known chromosome:CEL140:II:1742838:1745825:1 gene:F36H5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1742836-1745824(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol clec-19
Ensembl F36H5.6
Entrez Gene 185385 Entrez gene
SwissProt P91292 EMBL-EBI
WormBase CE09963 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK31517 C-type lectin protein 19 [Caenorhabditis elegans] ref|NP_494066.1| C-type LECtin family member (clec-19) [Caenorhabditis elegans] 0.0
blast AAK31517 C-type lectin protein 19 [Caenorhabditis elegans] ref|NP_494066.1| C-type LECtin family member (clec-19) [Caenorhabditis elegans] 1.0E-158
blast NP_494003 C-type LECtin family member (clec-20) [Caenorhabditis elegans] gb|AAC26308.1| Hypothetical protein T07H3.5 [Caenorhabditis elegans] 1.0E-115
blast NP_494002 C-type LECtin family member (clec-21) [Caenorhabditis elegans] gb|AAC26312.2| Hypothetical protein T07H3.4 [Caenorhabditis elegans] 8.0E-95
blast NP_494003 C-type LECtin family member (clec-20) [Caenorhabditis elegans] gb|AAC26308.1| Hypothetical protein T07H3.5 [Caenorhabditis elegans] 2.0E-93
blast NP_494003 C-type LECtin family member (clec-20) [Caenorhabditis elegans] gb|AAC26308.1| Hypothetical protein T07H3.5 [Caenorhabditis elegans] 2.0E-89
blast NP_494002 C-type LECtin family member (clec-21) [Caenorhabditis elegans] gb|AAC26312.2| Hypothetical protein T07H3.4 [Caenorhabditis elegans] 2.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 1.1E-9
Pfam IPR001304 EMBL-EBI C-type lectin 1.1E-9
Pfam IPR000859 EMBL-EBI CUB 3.1E-11
Pfam IPR001304 EMBL-EBI C-type lectin 1.1E-9
Pfam IPR000859 EMBL-EBI CUB 3.1E-11
Sequence
Target Sequence 
>C. ELEGANS:181753_AT
actctagcaagcatcttttcgccaaatgagaatgtattcattggagctgtttggcagtcg
tttcatgcgcccagatccgactggaattatgaaaaaatggacccattgcatgaacgagta
gatgcgtgtgttgtggtttctggagagcggagtaaggtttggggatattggtacaccgca
gattgcgatagtaaacataagttcttctgcaaacgctctgctggcttgaaatgtaatggt
gactttgaaacggtaaccgttgcaccgtggatctcatacacatgtaattcttcactaata
ctgacaccggcatcagtttcatctccacggagccaagctggaggcactgaacggagctat
tgcgaatatcaagttttcacaacaggatcaaacagtattttgatgacgtttctaaatttt
gacatgcacccatcggatgatgagctgacggtctatgatggagattcggcgaacagtagc
ttaatcggaactttcagtggaaaatatggtaatggcttgtctcttgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTCTAGCAAGCATCTTTTCGCCAA 179 101 886 Antisense
GCTGTTTGGCAGTCGTTTCATGCGC 696 293 931 Antisense
TCATGCGCCCAGATCCGACTGGAAT 131 623 948 Antisense
ATGCGTGTGTTGTGGTTTCTGGAGA 56 41 1007 Antisense
TAAGTTCTTCTGCAAACGCTCTGCT 282 637 1083 Antisense
AAACGCTCTGCTGGCTTGAAATGTA 703 121 1096 Antisense
TAACCGTTGCACCGTGGATCTCATA 654 637 1139 Antisense
TTCTTCACTAATACTGACACCGGCA 154 691 1173 Antisense
AGTTTCATCTCCACGGAGCCAAGCT 607 61 1200 Antisense
TTGACATGCACCCATCGGATGATGA 185 703 1304 Antisense
ATATGGTAATGGCTTGTCTCTTGCA 569 21 1389 Antisense
Sequence Source Affymetrix Proprietary Database