[Home] | [Total List]

[181752_at]

Description D1079.1 /REP_DB=WormBase Gene ID /WP=CE09057 /TR=O17322 /GB=AAB71239.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 22      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 80      6grp_total > 22      4grp_total > 52      6grp_highest_sub > 02      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 203.5
(1)
P 		215.1
(1.7)
P 		238.3
(3)
P 		134.8
(-3)
P 		104
B 227.7
(2.1)
P 		245.9
(3)
P 		163.3
(-0.9)
P 		119.3
(-3)
P 		127
C 225.4
(3)
P 		214
(2)
P 		158.2
(-3)
P 		170.7
(-1.9)
P 		67
avr 218.9
(2.6) 		225
(3) 		186.6
(0.2) 		141.6
(-3) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 190
1 2 3 4 5 6 range
A 216
(2.3)
P 		227.1
(3)
P 		217.7
(2.4)
P 		177.6
(-0.2)
P 		154.1
(-1.7)
P 		134.8
(-3)
P 		92
B 200.5
(1)
P 		245.2
(3)
P 		208.4
(1.4)
P 		188
(0.5)
P 		122.3
(-2.5)
P 		110.2
(-3)
P 		135
C 206.2
(0.8)
P 		275.5
(3)
P 		245.5
(2.1)
P 		135.4
(-1.4)
P 		105.3
(-2.4)
P 		85.2
(-3)
P 		190
avr 207.6
(1.2) 		249.3
(3) 		223.9
(1.9) 		167
(-0.5) 		127.2
(-2.3) 		110.1
(-3) 		139
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 74.1
(3)
P 		46.7
(-0)
P 		62.3
(1.7)
P 		19.7
(-3)
P 		54
B 72.6
(3)
P 		60.7
(1.5)
P 		37.8
(-1.4)
P 		25.4
(-3)
P 		47
C 74.6
(3)
P 		61.5
(1.3)
P 		55.1
(0.4)
P 		28.8
(-3)
P 		46
avr 73.8
(3) 		56.3
(0.9) 		51.7
(0.3) 		24.6
(-3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 39.8
(-2.1)
P 		80.8
(3)
P 		47.4
(-1.2)
P 		45
(-1.5)
P 		46.5
(-1.3)
P 		32.8
(-3)
P 		48
B 69.8
(1.3)
P 		81.6
(3)
P 		50.6
(-1.6)
P 		49.8
(-1.7)
P 		49.7
(-1.7)
P 		41.1
(-3)
P 		41
C 76.4
(2.2)
P 		84.1
(3)
P 		62.5
(0.7)
P 		27.2
(-3)
P 		34.1
(-2.3)
P 		28.5
(-2.9)
P 		57
avr 62
(0.5) 		82.2
(3) 		53.5
(-0.6) 		40.7
(-2.2) 		43.4
(-1.8) 		34.1
(-3) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181752_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17203
Sequence Type Exemplar sequence
Representative Public ID D1079.1 NCBI
Target Description D1079.1 /REP_DB=WormBase Gene ID /WP=CE09057 /TR=O17322 /GB=AAB71239.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076357(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076357 NCBI Caenorhabditis elegans D1079.1 (D1079.1) mRNA, complete cds. 11/11 None
GENEFINDER00000036778 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4405362:4405746:1 10/11 None
D1079.1 ENSEMBL cdna:known chromosome:CEL140:X:4405348:4405750:1 gene:D1079.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4405348-4405751(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D1079.1
Entrez Gene 183926 Entrez gene
SwissProt O17322 EMBL-EBI
WormBase CE09057 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71239 Hypothetical protein D1079.1 [Caenorhabditis elegans] ref|NP_508758.1| D1079.1 [Caenorhabditis elegans] 2.0E-58
blast AAB71239 Hypothetical protein D1079.1 [Caenorhabditis elegans] ref|NP_508758.1| D1079.1 [Caenorhabditis elegans] 4.0E-55
blast CAE68592 Hypothetical protein CBG14462 [Caenorhabditis briggsae] 1.0E-46
blast CAE68592 Hypothetical protein CBG14462 [Caenorhabditis briggsae] 1.0E-45
blast CAE72042 Hypothetical protein CBG19124 [Caenorhabditis briggsae] 3.0E-9
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508758.1 2 2-24,39-61
D1079.1 2 2-24,39-61
GENEFINDER00000036778 3 5-23,33-55,62-84
Sequence
Target Sequence 
>C. ELEGANS:181752_AT
gatcttttccagcatcggaacctgtctatcagcactgggatgtgtcttcaatggagtctt
actctatatatttctcggcaaaactcaacgaagctacccattccaaacatttttggcgtt
tctcgacttcatgctttgtgcactttatatccattgcttcggactgctatccatctcggt
tgagtacaaaattgcgtttctctataactttgtgatggacagcaatgtggtgacgctggt
tatgagtcggatcgtccagctttcgattccatacacgctcatcgccaactcggcagaaaa
g

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCTTTTCCAGCATCGGAACCTGT 221 413 15 Antisense
GGAACCTGTCTATCAGCACTGGGAT 275 531 31 Antisense
GTCTTACTCTATATATTTCTCGGCA 466 469 70 Antisense
ACGAAGCTACCCATTCCAAACATTT 266 91 102 Antisense
CATTTTTGGCGTTTCTCGACTTCAT 588 215 122 Antisense
TCGACTTCATGCTTTGTGCACTTTA 622 601 137 Antisense
TATCCATTGCTTCGGACTGCTATCC 71 659 162 Antisense
ACTGCTATCCATCTCGGTTGAGTAC 47 97 177 Antisense
TTATGAGTCGGATCGTCCAGCTTTC 621 679 254 Antisense
TCCAGCTTTCGATTCCATACACGCT 4 591 269 Antisense
GCTCATCGCCAACTCGGCAGAAAAG 344 301 291 Antisense
Sequence Source Affymetrix Proprietary Database