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[181751_at]

Description C38C5.1 /REP_DB=WormBase Gene ID /WP=CE04179 /TR=Q18505 /GB=AAA81421.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 55      4grp_total > 31      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 56.8
(3)
A 		10.3
(-3)
A 		27.5
(-0.8)
A 		20.8
(-1.6)
A 		47
B 60.3
(3)
A 		12.3
(-2.2)
A 		4.5
(-3)
A 		10.2
(-2.4)
A 		56
C 24.6
(-1.3)
A 		10
(-3)
A 		11.4
(-2.8)
A 		60.4
(3)
A 		50
avr 47.2
(3) 		10.9
(-3) 		14.5
(-2.4) 		30.5
(0.2) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 49.5
(1)
A 		6.6
(-3)
A 		45
(0.6)
A 		6.6
(-3)
A 		16.8
(-2)
A 		70.7
(3)
A 		64
B 28.3
(-1.4)
A 		38
(0.1)
A 		57.6
(3)
A 		44.2
(1)
A 		27.6
(-1.5)
A 		17.7
(-3)
A 		40
C 37
(3)
A 		32.6
(1.8)
A 		34.9
(2.4)
A 		28.2
(0.5)
A 		15.7
(-3)
A 		32.5
(1.7)
A 		21
avr 38.3
(1.3) 		25.7
(-1.7) 		45.8
(3) 		26.3
(-1.5) 		20
(-3) 		40.3
(1.7) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 20.7
(3)
A 		2.2
(-3)
A 		7.2
(-1.4)
A 		3
(-2.7)
A 		19
B 19.2
(3)
A 		3
(-2.3)
A 		1
(-3)
A 		2.2
(-2.6)
A 		18
C 8.2
(1.4)
A 		2.9
(-3)
A 		4
(-2.1)
A 		10.2
(3)
A 		7
avr 16
(3) 		2.7
(-3) 		4.1
(-2.4) 		5.1
(-1.9) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 9.1
(-0.1)
A 		2.4
(-2.7)
A 		9.8
(0.1)
A 		1.7
(-3)
A 		5.1
(-1.7)
A 		17.2
(3)
A 		16
B 9.8
(-0.4)
A 		12.7
(1.9)
A 		14
(3)
A 		11.7
(1.1)
A 		11.2
(0.7)
A 		6.6
(-3)
A 		7
C 13.7
(3)
A 		9.9
(0.3)
A 		8.9
(-0.3)
A 		5.7
(-2.6)
A 		5.1
(-3)
A 		10.9
(1)
A 		9
avr 10.9
(2.2) 		8.3
(-0.8) 		10.9
(2.2) 		6.4
(-3) 		7.1
(-2.2) 		11.6
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181751_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16767
Sequence Type Exemplar sequence
Representative Public ID C38C5.1 NCBI
Target Description C38C5.1 /REP_DB=WormBase Gene ID /WP=CE04179 /TR=Q18505 /GB=AAA81421.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076540
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000020595 ENSEMBL cdna:SNAP chromosome:CEL140:X:5560151:5560787:1 None
GENEFINDER00000020598 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5560151:5561282:1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076540 2/11 Cross Hyb Matching Probes None
SNAP00000020594 2/11 Cross Hyb Matching Probes None
C38C5.1 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5558980-5561290(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE68843 Hypothetical protein CBG14805 [Caenorhabditis briggsae] 2.0E-67
blast CAE68843 Hypothetical protein CBG14805 [Caenorhabditis briggsae] 4.0E-37
blast AAA81421 Hypothetical protein C38C5.1 [Caenorhabditis elegans] ref|NP_508941.2| C38C5.1 [Caenorhabditis elegans] 2.0E-19
Sequence
Target Sequence 
>C. ELEGANS:181751_AT
tgctccaagagcagcatggccctgctggcggaactcctactactggttccggatctggtt
ttgagccgatttctagcctgaaaatgaaaaagccttccacatcaaaaagctcatcacctc
ctggaacccctgtctccaaagaccaccgtgactcatttcgggattcatttaaaaagacac
tatttcgttcaagttcggacaaaaggaaaccaacgacttcaacggcatcggacatcgaac
tggcacatggtcatctcggagagcacgccgacaatccagcatctcgagtcgttcggcagt
tcaaatccgcgcacgaatccttccgcctccgcatgtttcaggagcagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTCCAAGAGCAGCATGGCCCTGC 133 583 14 Antisense
TCCTACTACTGGTTCCGGATCTGGT 667 591 48 Antisense
GGTTTTGAGCCGATTTCTAGCCTGA 670 505 70 Antisense
CACATCAAAAAGCTCATCACCTCCT 485 195 111 Antisense
AGACCACCGTGACTCATTTCGGGAT 709 69 153 Antisense
GGAAACCAACGACTTCAACGGCATC 567 523 218 Antisense
ACGGCATCGGACATCGAACTGGCAC 285 97 235 Antisense
TGGTCATCTCGGAGAGCACGCCGAC 292 551 261 Antisense
GACAATCCAGCATCTCGAGTCGTTC 353 365 283 Antisense
GTCGTTCGGCAGTTCAAATCCGCGC 176 473 301 Antisense
CGCCTCCGCATGTTTCAGGAGCAGC 700 255 337 Antisense
Sequence Source Affymetrix Proprietary Database