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[181750_s_at]

Description Y47D3B.5 /REP_DB=WormBase Gene ID /WP=CE19178 /TR=Q9XX01 /GB=CAA21041.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 18      4grp_high_8_8 > 25      6grp_highest_nonorm > 81      6grp_total > 16      4grp_total > 39      6grp_highest_sub > De      6grp_cgc > 03      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 383
1 2 3 4 range
A 446.7
(3)
P 		174.3
(-2.6)
P 		156.8
(-3)
A 		186.6
(-2.4)
P 		290
B 452.2
(3)
P 		193.4
(-1.6)
P 		116.4
(-3)
P 		318.9
(0.6)
P 		336
C 499.3
(3)
P 		203.8
(-1.8)
P 		131.5
(-3)
P 		243.4
(-1.2)
P 		368
avr 466.1
(3) 		190.5
(-2) 		134.9
(-3) 		249.6
(-0.9) 		331

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 210
1 2 3 4 5 6 range
A 246.8
(-0.2)
P 		296.7
(3)
P 		203.8
(-3)
P 		256.8
(0.4)
P 		211.7
(-2.5)
P 		221.1
(-1.9)
P 		93
B 378.6
(3)
P 		261.6
(-0.7)
P 		191.2
(-3)
P 		211
(-2.4)
P 		226.6
(-1.9)
P 		202.1
(-2.7)
P 		187
C 324.7
(3)
P 		269.4
(0.9)
P 		209.1
(-1.4)
P 		168.2
(-3)
P 		245.4
(-0)
P 		212.7
(-1.3)
P 		157
avr 316.7
(3) 		275.9
(0.9) 		201.4
(-3) 		212
(-2.4) 		227.9
(-1.6) 		212
(-2.4) 		115
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 162.6
(3)
P 		37.8
(-2.5)
P 		41
(-2.4)
A 		27.3
(-3)
P 		135
B 144.2
(3)
P 		47.8
(-1.9)
P 		27
(-3)
P 		68
(-0.9)
P 		117
C 165.3
(3)
P 		58.6
(-2.2)
P 		45.8
(-2.8)
P 		41
(-3)
P 		124
avr 157.4
(3) 		48.1
(-2.5) 		37.9
(-3) 		45.4
(-2.6) 		120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 45.5
(-2.9)
P 		105.5
(3)
P 		44.4
(-3)
P 		65.1
(-1)
P 		63.9
(-1.1)
P 		53.8
(-2.1)
P 		61
B 131.7
(3)
P 		87.1
(-0.1)
P 		46.4
(-3)
P 		55.9
(-2.3)
P 		92.1
(0.2)
P 		75.3
(-1)
P 		85
C 120.4
(3)
P 		82.2
(0.4)
P 		53.2
(-1.7)
P 		33.8
(-3)
P 		79.4
(0.2)
P 		71.2
(-0.4)
P 		87
avr 99.2
(3) 		91.6
(2.1) 		48
(-3) 		51.6
(-2.6) 		78.5
(0.6) 		66.8
(-0.8) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181750_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7623
Sequence Type Exemplar sequence
Representative Public ID Y47D3B.5 NCBI
Target Description Y47D3B.5 /REP_DB=WormBase Gene ID /WP=CE19178 /TR=Q9XX01 /GB=CAA21041.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027713(11), NM_001027712(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027713 NCBI Caenorhabditis elegans TWiK family of potassium channels family member (twk-31) (twk-31) mRNA, complete cds. 11/11 None
NM_001027712 NCBI Caenorhabditis elegans TWiK family of potassium channels family member (twk-31) (twk-31) mRNA, complete cds. 11/11 None
GENEFINDER00000004529 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11410624:11424186:1 11/11 None
Y47D3B.5b ENSEMBL cdna:known chromosome:CEL140:III:11410588:11424514:1 gene:Y47D3B.5 11/11 None
Y47D3B.5a ENSEMBL cdna:known chromosome:CEL140:III:11410624:11424510:1 gene:Y47D3B.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004514 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11410619-11424182(+) 99.88 100.0
Public Domain and Genome References
Ensembl Y47D3B.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH04762 Hypothetical protein Y47D3B.5b [Caenorhabditis elegans] ref|NP_001022884.1| TWiK family of potassium channels family member (twk-31) [Caenorhabditis elegans] 0.0
blast CAA21041 Hypothetical protein Y47D3B.5a [Caenorhabditis elegans] ref|NP_001022883.1| TWiK family of potassium channels family member (twk-31) [Caenorhabditis elegans] 0.0
blast CAE67712 Hypothetical protein CBG13286 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022884.1 6 145-164,229-248,252-274,340-362,367-389,396-418
NP_001022883.1 6 145-164,229-248,252-274,340-362,367-389,396-418
Y47D3B.5b 6 145-164,229-248,252-274,340-362,367-389,396-418
Y47D3B.5a 6 145-164,229-248,252-274,340-362,367-389,396-418
GENEFINDER00000004529 6 145-164,198-217,221-243,309-331,336-358,365-387
Sequence
Target Sequence 
>C. ELEGANS:181750_S_AT
aatgagcactcaatattctccaccgccaggcttcgatcggctatcagaaccacatagtac
tcgagcgagaagctcatcgaccagtggaatgggcacaagtatatttgaggatgagacacg
acaggaagtgattgtgcagactgatgactcgtatcttaagattgctagaaggctggatga
atatcggaataataagacgcagtttttgccggtttgtgcagctgctccattgtcttcgaa
agaagttgagccattcaaaagcgaccgcccatcagaacgaagtcactactactttggcgg
gggccgtcgtgcaagtctaggccgtggccggaagaagccccgtcaagatatgagatacgg
agagtcacagactgggcaatctatggatgcagaacttttgaaagaggttctaagctccga
aaaaagtcggtcaatttcgccgaaacgaccatgtaacaagcgtggtgttttatcaaggca
tccgtcactgccaacagggatttctcgtggaaaagtctccgactacgtgatccagcacga
gaaaggaatccataaccctgcgacaaatcgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGAGCACTCAATATTCTCCACCG 259 165 2799 Antisense
GGCTTCGATCGGCTATCAGAACCAC 566 537 2827 Antisense
AGAACCACATAGTACTCGAGCGAGA 704 73 2844 Antisense
GTGCAGACTGATGACTCGTATCTTA 480 479 2932 Antisense
AGACGCAGTTTTTGCCGGTTTGTGC 422 71 2993 Antisense
GCTGCTCCATTGTCTTCGAAAGAAG 605 297 3019 Antisense
CGACCGCCCATCAGAACGAAGTCAC 469 251 3060 Antisense
GTGGTGTTTTATCAAGGCATCCGTC 506 487 3260 Antisense
GTCACTGCCAACAGGGATTTCTCGT 197 459 3282 Antisense
TCTCCGACTACGTGATCCAGCACGA 303 611 3314 Antisense
ATCCATAACCCTGCGACAAATCGTC 361 37 3346 Antisense
Sequence Source Affymetrix Proprietary Database