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[181747_at] 7TM receptor, srx family

Description T21B4.12 /REP_DB=WormBase Gene ID /WP=CE16436 /TR=O18106 /GB=CAB03379.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 44      6grp_cgc > 52      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 101.6
(3)
P 		89.7
(-1.8)
A 		86.7
(-3)
A 		99.2
(2)
A 		15
B 98.4
(1.6)
M 		108.9
(3)
A 		62.4
(-3)
A 		73.1
(-1.6)
A 		47
C 76.4
(-1.4)
A 		80.3
(-0.1)
A 		89.4
(3)
A 		71.7
(-3)
A 		18
avr 92.1
(2.6) 		93
(3) 		79.5
(-3) 		81.3
(-2.2) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 97.8
(1.5)
A 		62
(-3)
A 		65.1
(-2.6)
P 		87.1
(0.1)
A 		109.9
(3)
M 		65.8
(-2.5)
A 		48
B 124.6
(3)
A 		109.6
(1)
A 		84.6
(-2.3)
A 		84
(-2.4)
A 		88.5
(-1.8)
A 		79.4
(-3)
A 		45
C 41.6
(-3)
A 		123
(3)
M 		48.9
(-2.5)
A 		103.3
(1.5)
A 		70.7
(-0.9)
A 		85.8
(0.3)
A 		81
avr 88
(1.1) 		98.2
(3) 		66.2
(-3) 		91.5
(1.7) 		89.7
(1.4) 		77
(-1) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 37
(3)
P 		19.5
(-1.7)
A 		22.7
(-0.8)
A 		14.5
(-3)
A 		23
B 31.4
(3)
M 		26.9
(1.4)
A 		14.4
(-3)
A 		15.6
(-2.6)
A 		17
C 25.3
(1.1)
A 		23.1
(0.5)
A 		31.2
(3)
A 		12.1
(-3)
A 		19
avr 31.2
(3) 		23.2
(0.2) 		22.8
(0.1) 		14.1
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 18
(-1.8)
A 		22
(-0.5)
A 		14.2
(-3)
P 		22.1
(-0.5)
A 		33.2
(3)
M 		16
(-2.4)
A 		19
B 43.3
(3)
A 		36.5
(1.2)
A 		20.5
(-3)
A 		22.2
(-2.6)
A 		36
(1.1)
A 		29.6
(-0.6)
A 		23
C 15.4
(-2.3)
A 		37.5
(3)
M 		12.4
(-3)
A 		20.8
(-1)
A 		22.9
(-0.5)
A 		28.7
(0.9)
A 		25
avr 25.6
(0.6) 		32
(3) 		15.7
(-3) 		21.7
(-0.8) 		30.7
(2.5) 		24.8
(0.3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181747_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3862
Sequence Type Exemplar sequence
Representative Public ID T21B4.12 NCBI
Target Description T21B4.12 /REP_DB=WormBase Gene ID /WP=CE16436 /TR=O18106 /GB=CAB03379.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064274(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064274 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-118) (srx-118) mRNA, complete cds. 11/11 None
T21B4.12 ENSEMBL cdna:known chromosome:CEL140:II:12525731:12527771:1 gene:T21B4.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12525882-12527570(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, srx family
Gene Symbol srx-118
Ensembl T21B4.12
Entrez Gene 188681 Entrez gene
SwissProt O18106 EMBL-EBI
WormBase CE36326 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03379 Hypothetical protein T21B4.12 [Caenorhabditis elegans] ref|NP_496675.2| Serpentine Receptor, class X family member (srx-118) [Caenorhabditis elegans] 1.0E-179
blast AAF99934 Serpentine receptor, class x protein 122 [Caenorhabditis elegans] ref|NP_503912.2| Serpentine Receptor, class X family member (srx-122) [Caenorhabditis elegans] 1.0E-122
blast CAB04431 Hypothetical protein F49C5.2 [Caenorhabditis elegans] ref|NP_496677.2| Serpentine Receptor, class X family member (srx-120) [Caenorhabditis elegans] 1.0E-121
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496675.2 7 24-46,53-75,98-120,133-155,188-210,231-253,263-285
T21B4.12 7 24-46,53-75,98-120,133-155,188-210,231-253,263-285
Sequence
Target Sequence 
>C. ELEGANS:181747_AT
tgaagaccctccaaatcactggctaaatgcggcgatgggccaatttatagcgtggttcgg
gtggagtataggcccgctgtctcaaattttgctaaccgtcaatcgaatcatagccgtcta
ttttccattgttatacatgaaaaagtatcggtataaccctacaaatgtcggtattggatt
ttctttttttgttgctttcatccttctggtttcattttttccagaaggctgccactacct
tttcaatcgtgactatctcggttgggtcggcgagttcactccgtgcattgatattatgca
aaagacgtttttggtcgttatgatgacgatttgcgccttaacgacgtgttgcagtgtttt
gcttttcatcaagttgatcatacattcccccaatttccgcgtttcaaatgctcaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAGACCCTCCAAATCACTGGCTA 652 573 153 Antisense
GCCCGCTGTCTCAAATTTTGCTAAC 473 285 224 Antisense
GAATCATAGCCGTCTATTTTCCATT 600 327 257 Antisense
TCATCCTTCTGGTTTCATTTTTTCC 695 621 350 Antisense
ATTTTTTCCAGAAGGCTGCCACTAC 236 15 366 Antisense
CTGCCACTACCTTTTCAATCGTGAC 589 235 381 Antisense
ATCGTGACTATCTCGGTTGGGTCGG 204 25 398 Antisense
GCGAGTTCACTCCGTGCATTGATAT 147 291 422 Antisense
GATGACGATTTGCGCCTTAACGACG 10 411 474 Antisense
AAGTTGATCATACATTCCCCCAATT 156 157 523 Antisense
ATTTCCGCGTTTCAAATGCTCAACT 637 9 545 Antisense
Sequence Source Affymetrix Proprietary Database