[Home] | [Total List]

[181745_at]

Description ZK783.1 /REP_DB=WormBase Gene ID /WP=CE25695 /TR=Q23587 /GB=AAC24418.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 01      6grp_high1_10_10 > 0      4grp_high_8_8 > 37      6grp_highest_nonorm > 60      6grp_total > 09      4grp_total > 42      6grp_cgc > 0      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 494
1 2 3 4 range
A 63.7
(-3)
P 		450.3
(3)
P 		330.1
(1.1)
P 		329.6
(1.1)
P 		387
B 35.7
(-3)
A 		467.1
(3)
P 		349.9
(1.4)
P 		199
(-0.7)
P 		431
C 69.8
(-3)
P 		530
(3)
P 		372.3
(0.9)
P 		258.5
(-0.5)
P 		460
avr 56.4
(-3) 		482.5
(3) 		350.8
(1.1) 		262.4
(-0.1) 		426

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 817
1 2 3 4 5 6 range
A 952.3
(3)
P 		281.4
(-1.9)
P 		288.7
(-1.9)
P 		506.1
(-0.3)
P 		241.8
(-2.2)
P 		135.4
(-3)
P 		817
B 597.2
(3)
P 		307.7
(-1.3)
P 		246.7
(-2.3)
P 		508.3
(1.7)
P 		245.7
(-2.3)
P 		196.7
(-3)
P 		401
C 801.7
(3)
P 		288.8
(-1.8)
P 		529.7
(0.4)
P 		558.9
(0.7)
P 		290.9
(-1.8)
P 		164.3
(-3)
P 		637
avr 783.7
(3) 		292.6
(-1.8) 		355
(-1.2) 		524.4
(0.5) 		259.5
(-2.1) 		165.5
(-3) 		618
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 23.2
(-3)
P 		97.7
(3)
P 		86.3
(2.1)
P 		48.3
(-1)
P 		75
B 11.4
(-3)
A 		115.4
(3)
P 		81.1
(1)
P 		42.4
(-1.2)
P 		104
C 23.1
(-3)
P 		152.4
(3)
P 		129.8
(2)
P 		43.6
(-2)
P 		129
avr 19.2
(-3) 		121.8
(3) 		99.1
(1.7) 		44.8
(-1.5) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 264
1 2 3 4 5 6 range
A 175.6
(3)
P 		100.1
(-0.2)
P 		62.9
(-1.7)
P 		128.3
(1)
P 		73
(-1.3)
P 		33
(-3)
P 		143
B 207.8
(3)
P 		102.4
(-1.3)
P 		59.9
(-3)
P 		134.6
(0)
P 		99.8
(-1.4)
P 		73.3
(-2.5)
P 		148
C 297.2
(3)
P 		88.1
(-2.2)
P 		134.8
(-1)
P 		112.4
(-1.6)
P 		94.1
(-2)
P 		55
(-3)
P 		242
avr 226.9
(3) 		96.9
(-1.5) 		85.9
(-1.9) 		125.1
(-0.5) 		89
(-1.8) 		53.8
(-3) 		173
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181745_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7806
Sequence Type Exemplar sequence
Representative Public ID ZK783.1 NCBI
Target Description ZK783.1 /REP_DB=WormBase Gene ID /WP=CE25695 /TR=Q23587 /GB=AAC24418.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066269(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066269 NCBI Caenorhabditis elegans ZK783.1 (ZK783.1) mRNA, complete cds. 11/11 None
GENEFINDER00000009371 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7626135:7640479:1 11/11 None
SNAP00000009362 ENSEMBL cdna:SNAP chromosome:CEL140:III:7626750:7640479:1 11/11 None
ZK783.1 ENSEMBL cdna:known chromosome:CEL140:III:7625886:7640998:1 gene:ZK783.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7625883-7640236(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol fbn-1
Ensembl ZK783.1
Entrez Gene 176076 Entrez gene
SwissProt Q23587 EMBL-EBI
WormBase CE25695 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4295 trypsin activity inferred from electronic annotation QuickGO AmiGO
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC24418 Hypothetical protein ZK783.1 [Caenorhabditis elegans] ref|NP_498670.1| ZK783.1 [Caenorhabditis elegans] 0.0
blast CAE57171 Hypothetical protein CBG00005 [Caenorhabditis briggsae] 0.0
blast CAG10182 unnamed protein product [Tetraodon nigroviridis] 5.0E-77
Protein Domains
Database ID Description E-Value
Pfam IPR006209 EMBL-EBI EGF-like domain 3.7E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 6.2E-7
Pfam IPR006209 EMBL-EBI EGF-like domain 7.0E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 3.7E-8
Pfam IPR006209 EMBL-EBI EGF-like domain 3.3E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 1.8E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 1.9E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 5.5E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 3.7E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 2.1E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 2.4E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 1.5E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 5.4E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 1.9E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 1.6E-4
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 1.4E-20
Pfam IPR006209 EMBL-EBI EGF-like domain 3.7E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 6.2E-7
Pfam IPR006209 EMBL-EBI EGF-like domain 7.0E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 3.7E-8
Pfam IPR006209 EMBL-EBI EGF-like domain 3.3E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 1.8E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 1.9E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 5.5E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 3.7E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 2.1E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 2.4E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 1.5E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 5.4E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 1.9E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 1.6E-4
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 1.4E-20
Pfam IPR006209 EMBL-EBI EGF-like domain 3.7E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 6.2E-7
Pfam IPR006209 EMBL-EBI EGF-like domain 7.0E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 3.7E-8
Pfam IPR006209 EMBL-EBI EGF-like domain 3.3E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 1.8E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 1.9E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 5.5E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 3.7E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 2.1E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 2.4E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 1.5E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 5.4E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 1.9E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 1.6E-4
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 4.4E-11
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000009371 1 3760-3782
SNAP00000009362 1 3705-3727
Sequence
Target Sequence 
>C. ELEGANS:181745_AT
tcagctcattgttgaactctcgcaagccatatgttttcaaagtcgttttccaacattgtg
atgtacaacttctcgataatcatactatggcgtcaacagtggttgtacaaaaacatgcaa
tgttcttgacgaataaggccgactcctacgacctccgatgccaatacccaattggttccc
gtgctgttgaatctcatgtgaatgtttctgaacttgctacaacctccacactcacagaaa
agaattctacacttgctccaatctgcagattatcagtttcaaatgatcaacattcatcaa
tcagttcagcgatggtcggcgacactttgaagcttgctttggaagttacgccatccgaaa
actttggcattttgccaagaaactgtttcgcaatcaatattgagagtggagagagatata
cattgacagatgacatgggatgtgctattgatgagtcattgttcccacaatggtctgctg
ccacgtcatcaaaaaaggcatcagacgacgtcacctgttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGCTCATTGTTGAACTCTCGCAA 94 625 7205 Antisense
ACTCTCGCAAGCCATATGTTTTCAA 180 101 7220 Antisense
GACGAATAAGGCCGACTCCTACGAC 160 381 7332 Antisense
GCCAATACCCAATTGGTTCCCGTGC 591 255 7364 Antisense
TTCCCGTGCTGTTGAATCTCATGTG 183 699 7380 Antisense
TGTTTCTGAACTTGCTACAACCTCC 547 561 7407 Antisense
CAACCTCCACACTCACAGAAAAGAA 312 187 7424 Antisense
AGAATTCTACACTTGCTCCAATCTG 483 75 7445 Antisense
AGTTCAGCGATGGTCGGCGACACTT 704 63 7507 Antisense
GGCGACACTTTGAAGCTTGCTTTGG 39 543 7522 Antisense
GGCATCAGACGACGTCACCTGTTGT 512 537 7701 Antisense
Sequence Source Affymetrix Proprietary Database