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[181744_at]

Description M03F4.5 /REP_DB=WormBase Gene ID /WP=CE12364 /TR=Q23015 /GB=AAB04576.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 09      6grp_total > 19      4grp_total > 49      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 26.4
(-3)
A 		121.2
(3)
P 		101.2
(1.7)
P 		81.4
(0.5)
P 		95
B 3.6
(-3)
A 		85
(3)
P 		62.6
(1.3)
P 		5.8
(-2.8)
A 		81
C 46
(-2.9)
A 		80.7
(1.2)
P 		96.3
(3)
P 		45
(-3)
M 		51
avr 25.3
(-3) 		95.6
(3) 		86.7
(2.2) 		44.1
(-1.4) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 45.6
(-0.3)
M 		25.3
(-3)
A 		68.2
(2.6)
P 		70.9
(3)
P 		54.2
(0.8)
P 		34.6
(-1.8)
A 		46
B 66.4
(2.9)
P 		38.4
(-2.2)
M 		34.2
(-3)
P 		59.1
(1.6)
P 		67
(3)
P 		53.2
(0.5)
P 		33
C 95.1
(1.1)
P 		58.1
(-1.8)
P 		43.2
(-3)
A 		50.4
(-2.4)
A 		119.9
(3)
P 		46.5
(-2.7)
A 		77
avr 69
(1.3) 		40.6
(-3) 		48.5
(-1.8) 		60.1
(-0.1) 		80.4
(3) 		44.8
(-2.4) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 9.6
(-3)
A 		26.3
(2.9)
P 		26.5
(3)
P 		11.9
(-2.2)
P 		17
B 1.1
(-3)
A 		21
(3)
P 		14.5
(1)
P 		1.2
(-3)
A 		20
C 15.2
(-1.2)
A 		23.2
(0.6)
P 		33.5
(3)
P 		7.6
(-3)
M 		26
avr 8.6
(-2.4) 		23.5
(2.6) 		24.8
(3) 		6.9
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 8.4
(-3)
M 		9
(-2.6)
A 		14.9
(1.1)
P 		18
(3)
P 		16.3
(1.9)
P 		8.4
(-3)
A 		10
B 23.1
(1.7)
P 		12.8
(-1.6)
M 		8.3
(-3)
P 		15.6
(-0.7)
P 		27.2
(3)
P 		19.9
(0.7)
P 		19
C 35.2
(2.2)
P 		17.7
(-1.4)
P 		11
(-2.8)
A 		10.1
(-3)
A 		38.8
(3)
P 		15.6
(-1.9)
A 		29
avr 22.2
(1.1) 		13.2
(-2.3) 		11.4
(-3) 		14.6
(-1.8) 		27.4
(3) 		14.6
(-1.8) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181744_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16354
Sequence Type Exemplar sequence
Representative Public ID M03F4.5 NCBI
Target Description M03F4.5 /REP_DB=WormBase Gene ID /WP=CE12364 /TR=Q23015 /GB=AAB04576.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076442
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000026191 ENSEMBL cdna:SNAP chromosome:CEL140:X:4965789:4969288:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076442 5/11 Cross Hyb Matching Probes A 
GENEFINDER00000026199 5/11 Cross Hyb Matching Probes None
M03F4.6 5/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4965789-4966298(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04576 Hypothetical protein M03F4.6 [Caenorhabditis elegans] ref|NP_508843.1| M03F4.6 [Caenorhabditis elegans] 0.0
blast CAE68671 Hypothetical protein CBG14575 [Caenorhabditis briggsae] 0.0
blast T25841 hypothetical protein M03F4.6 - Caenorhabditis elegans 6.0E-98
Protein Domains
Database ID Description E-Value
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 1.9E-9
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 7.4E-8
Sequence
Target Sequence 
>C. ELEGANS:181744_AT
gcacgctaggctcttgtcaatgcaaacttggatatcacgagaataacgacgagagattct
taacgtgcaccaaagactgtaccctcgaagaagtcgctagtaacgatagatgcctggcaa
aagtacaactcggtgcccgctgctattcgaacaagcagtgcattcaatcagcagaatgtc
gctttggaacctgtcaatgtagatgcgggtacaaacaagtcaaagtgagtcagatcgtgg
ttcccggggccttttgttttattgtttcatttgtgaattgttggagaagggagggaggtc
cgcagcttcttatcgtaatgttacaatgccaaggagctccacaaatttgcatcatcactc
atcctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACGCTAGGCTCTTGTCAATGCAA 405 315 20 Antisense
GTCAATGCAAACTTGGATATCACGA 665 463 35 Antisense
GGATATCACGAGAATAACGACGAGA 226 511 49 Antisense
CGAGAGATTCTTAACGTGCACCAAA 360 249 69 Antisense
TTCTTAACGTGCACCAAAGACTGTA 576 675 76 Antisense
AAGTGAGTCAGATCGTGGTTCCCGG 35 159 242 Antisense
GAGAAGGGAGGGAGGTCCGCAGCTT 581 389 303 Antisense
TCCGCAGCTTCTTATCGTAATGTTA 512 595 318 Antisense
GTTACAATGCCAAGGAGCTCCACAA 362 445 339 Antisense
GAGCTCCACAAATTTGCATCATCAC 663 387 353 Antisense
CAAATTTGCATCATCACTCATCCTT 77 195 361 Antisense
Sequence Source Affymetrix Proprietary Database