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[181740_at] 7TM chemoreceptor, srx family

Description F40H7.5 /REP_DB=WormBase Gene ID /WP=CE10206 /TR=O17091 /GB=AAF39805.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 27      4grp_total > 18      6grp_cgc > 06      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 3.9
(-3)
A 		28.3
(1.3)
A 		17.7
(-0.5)
A 		37.6
(3)
A 		34
B 22.9
(0.1)
A 		2.8
(-3)
A 		21.6
(-0.1)
A 		42.2
(3)
A 		39
C 15.6
(-2.7)
A 		40.9
(-0)
A 		12.6
(-3)
A 		69.3
(3)
A 		57
avr 14.1
(-3) 		24
(-1.3) 		17.3
(-2.5) 		49.7
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 16.1
(3)
A 		12.7
(1.5)
A 		5.9
(-1.6)
A 		3.6
(-2.6)
A 		2.7
(-3)
A 		15.9
(2.9)
A 		13
B 32.1
(3)
A 		7.1
(-2)
A 		3.2
(-2.8)
A 		2.2
(-3)
A 		6
(-2.2)
A 		13.7
(-0.7)
A 		30
C 17.2
(3)
A 		10.7
(0.5)
A 		2.6
(-2.6)
A 		7.2
(-0.8)
A 		2.1
(-2.8)
A 		1.6
(-3)
A 		16
avr 21.8
(3) 		10.2
(-0.8) 		3.9
(-2.9) 		4.3
(-2.8) 		3.6
(-3) 		10.4
(-0.8) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1.4
(-3)
A 		6.1
(3)
A 		4.6
(1.1)
A 		5.5
(2.2)
A 		5
B 7.3
(1.8)
A 		0.7
(-3)
A 		5
(0.1)
A 		9
(3)
A 		8
C 5.2
(-2.3)
A 		11.7
(3)
A 		4.4
(-3)
A 		11.7
(3)
A 		7
avr 4.6
(-3) 		6.2
(-0.7) 		4.7
(-2.9) 		8.7
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 3
(0.6)
A 		4.5
(3)
A 		1.3
(-2.2)
A 		0.9
(-2.8)
A 		0.8
(-3)
A 		3.9
(2)
A 		4
B 11.2
(3)
A 		2.4
(-2)
A 		0.8
(-2.9)
A 		0.6
(-3)
A 		2.4
(-2)
A 		5.1
(-0.5)
A 		11
C 6.4
(3)
A 		3.3
(-0.2)
A 		0.7
(-2.8)
A 		1.5
(-2)
A 		0.7
(-2.8)
A 		0.5
(-3)
A 		6
avr 6.9
(3) 		3.4
(-0.5) 		0.9
(-3) 		1
(-2.9) 		1.3
(-2.6) 		3.2
(-0.7) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181740_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4379
Sequence Type Exemplar sequence
Representative Public ID F40H7.5 NCBI
Target Description F40H7.5 /REP_DB=WormBase Gene ID /WP=CE10206 /TR=O17091 /GB=AAF39805.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062216(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062216 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-102) (srx-102) mRNA, complete cds. 10/11 None
GENEFINDER00000031710 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3693395:3694588:-1 10/11 None
F40H7.5 ENSEMBL cdna:known chromosome:CEL140:II:3693395:3694758:-1 gene:F40H7.5 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031702 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3693393-3694587(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-102
Ensembl F40H7.5
Entrez Gene 185582 Entrez gene
SwissProt O17091 EMBL-EBI
WormBase CE36436 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39805 Serpentine receptor, class x protein 102 [Caenorhabditis elegans] ref|NP_494617.2| Serpentine Receptor, class X family member (srx-102) [Caenorhabditis elegans] 1.0E-170
blast AAF39805 Serpentine receptor, class x protein 102 [Caenorhabditis elegans] ref|NP_494617.2| Serpentine Receptor, class X family member (srx-102) [Caenorhabditis elegans] 1.0E-147
blast AAF39804 Serpentine receptor, class x protein 101 [Caenorhabditis elegans] ref|NP_494615.2| Serpentine Receptor, class X family member (srx-101) [Caenorhabditis elegans] 1.0E-120
blast CAE73852 Hypothetical protein CBG21428 [Caenorhabditis briggsae] 1.0E-110
blast AAF39804 Serpentine receptor, class x protein 101 [Caenorhabditis elegans] ref|NP_494615.2| Serpentine Receptor, class X family member (srx-101) [Caenorhabditis elegans] 1.0E-102
blast CAE73852 Hypothetical protein CBG21428 [Caenorhabditis briggsae] 5.0E-98
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494617.2 5 26-48,69-91,106-128,141-163,191-213
F40H7.5 5 26-48,69-91,106-128,141-163,191-213
GENEFINDER00000031710 4 17-39,65-87,100-122,150-172
Sequence
Target Sequence 
>C. ELEGANS:181740_AT
atggctatgaactttcgtgtccttcaaagcttctgcaaacagaaaatgtcgagtttttat
cttatgtgctcttcgaaaactctatccaacatgtgcattttattgggatacgtcgttcat
aatgctccaatcacaatcatgaacaattttaatggaccaactttcatgaacacccttgtc
aatgaaatgctgagctatggaatctacattgtaggtcctataatccaattcatgatatct
ataaatcgtctcatgattattatattcgtaaagcagtctatgacccagaacaaccaaaac
ctcacaattatacttttagccataacctggctggcgggtattttattgactgtgataacc
tctgttgacacctgtaatttgacctacaatcctgaactgttaaactggtggcatgatggg
tgtggtaattttgttggcgatgcagtcactgcgtttgtaattttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCTATGAACTTTCGTGTCCTTC 192 53 13 Antisense
CGTGTCCTTCAAAGCTTCTGCAAAC 428 245 28 Antisense
AATGCTCCAATCACAATCATGAACA 59 167 133 Antisense
GACCAACTTTCATGAACACCCTTGT 301 381 167 Antisense
GTAGGTCCTATAATCCAATTCATGA 17 457 223 Antisense
ACCTCACAATTATACTTTTAGCCAT 563 85 311 Antisense
GGCTGGCGGGTATTTTATTGACTGT 603 539 341 Antisense
GATAACCTCTGTTGACACCTGTAAT 251 423 366 Antisense
ATTTGACCTACAATCCTGAACTGTT 657 17 389 Antisense
TTTTGTTGGCGATGCAGTCACTGCG 193 679 441 Antisense
GCAGTCACTGCGTTTGTAATTTTAT 184 309 454 Antisense
Sequence Source Affymetrix Proprietary Database