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[181739_at]

Description F13C5.4 /REP_DB=WormBase Gene ID /WP=CE19386 /TR=O76563 /GB=AAC64612.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 33      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 0.8
(-3)
A 		6.1
(-2.2)
A 		14.7
(-1)
A 		42.8
(3)
A 		42
B 1.3
(-2.8)
A 		20.1
(3)
A 		5.7
(-1.5)
A 		0.7
(-3)
A 		19
C 16.6
(0.8)
A 		17.2
(0.9)
A 		24
(3)
A 		4.2
(-3)
A 		20
avr 6.2
(-3) 		14.5
(2.1) 		14.8
(2.3) 		15.9
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 25.1
(2.3)
A 		4.9
(-2.4)
A 		2.3
(-3)
A 		5.5
(-2.3)
A 		28.2
(3)
A 		19
(0.9)
A 		26
B 13.4
(-0.3)
A 		25
(3)
A 		19.2
(1.4)
A 		3.7
(-3)
A 		15.2
(0.2)
A 		7.7
(-1.9)
A 		21
C 2.7
(-2.9)
A 		18.2
(-0.5)
A 		6.2
(-2.3)
A 		40.6
(3)
A 		9.5
(-1.8)
A 		1.9
(-3)
A 		39
avr 13.7
(0.2) 		16
(1.9) 		9.2
(-3) 		16.6
(2.3) 		17.6
(3) 		9.5
(-2.8) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.3
(-3)
A 		1.3
(-2)
A 		3.8
(0.5)
A 		6.3
(3)
A 		6
B 0.4
(-2.6)
A 		5
(3)
A 		1.3
(-1.5)
A 		0.1
(-3)
A 		5
C 5.5
(0.7)
A 		4.9
(0.3)
A 		8.4
(3)
A 		0.7
(-3)
A 		8
avr 2.1
(-3) 		3.7
(1) 		4.5
(3) 		2.4
(-2.3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 4.6
(0.1)
A 		1.7
(-2.1)
A 		0.5
(-3)
A 		1.4
(-2.3)
A 		8.5
(3)
A 		4.6
(0.1)
A 		8
B 4.6
(-0)
A 		8.3
(3)
A 		4.7
(0)
A 		1
(-3)
A 		6.2
(1.3)
A 		2.9
(-1.4)
A 		7
C 1
(-2.7)
A 		5.5
(0.9)
A 		1.6
(-2.2)
A 		8.2
(3)
A 		3.1
(-1)
A 		0.6
(-3)
A 		8
avr 3.4
(-1.2) 		5.2
(1.8) 		2.3
(-3) 		3.5
(-1) 		5.9
(3) 		2.7
(-2.3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181739_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18242
Sequence Type Exemplar sequence
Representative Public ID F13C5.4 NCBI
Target Description F13C5.4 /REP_DB=WormBase Gene ID /WP=CE19386 /TR=O76563 /GB=AAC64612.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075725(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075725 NCBI Caenorhabditis elegans F13C5.4 (F13C5.4) mRNA, complete cds. 11/11 None
GENEFINDER00000042507 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:596314:601427:-1 9/11 None
F13C5.4 ENSEMBL cdna:known chromosome:CEL140:X:599066:599448:-1 gene:F13C5.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:599065-599448(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F13C5.4
Entrez Gene 184412 Entrez gene
SwissProt O76563 EMBL-EBI
WormBase CE19386 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC64613 Hypothetical protein F13C5.3 [Caenorhabditis elegans] ref|NP_508125.2| F13C5.3 [Caenorhabditis elegans] 1.0E-159
blast CAE63645 Hypothetical protein CBG08143 [Caenorhabditis briggsae] 1.0E-135
blast AAC64612 Hypothetical protein F13C5.4 [Caenorhabditis elegans] ref|NP_508126.1| F13C5.4 [Caenorhabditis elegans] 5.0E-35
blast AAC64612 Hypothetical protein F13C5.4 [Caenorhabditis elegans] ref|NP_508126.1| F13C5.4 [Caenorhabditis elegans] 4.0E-15
Sequence
Target Sequence 
>C. ELEGANS:181739_AT
atgtacgcaagttttctgaaatccgagttcaactatacttcttttctaagacgagccgat
cactctgctgaacgatatgttccttttcaggatactagtaatgacacttttttcaaggtt
ggaataatactcacatttttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTACGCAAGTTTTCTGAAATCCG 50 47 13 Antisense
GCAAGTTTTCTGAAATCCGAGTTCA 23 321 19 Antisense
TCCGAGTTCAACTATACTTCTTTTC 237 595 34 Antisense
ATACTTCTTTTCTAAGACGAGCCGA 604 21 47 Antisense
TCTAAGACGAGCCGATCACTCTGCT 497 613 57 Antisense
GCCGATCACTCTGCTGAACGATATG 537 283 67 Antisense
CACTCTGCTGAACGATATGTTCCTT 661 197 73 Antisense
GATATGTTCCTTTTCAGGATACTAG 536 425 86 Antisense
GGATACTAGTAATGACACTTTTTTC 682 507 102 Antisense
ATGACACTTTTTTCAAGGTTGGAAT 489 23 113 Antisense
GGTTGGAATAATACTCACATTTTTT 575 505 129 Antisense
Sequence Source Affymetrix Proprietary Database