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[181738_at]

Description T13C5.2 /REP_DB=WormBase Gene ID /WP=CE04943 /TR=Q22458 /GB=AAK39288.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 03      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 73.3
(1.6)
A 		18.7
(-2.1)
A 		5.9
(-3)
A 		93.8
(3)
A 		88
B 45.6
(-3)
A 		96.5
(3)
A 		92.5
(2.5)
A 		51.2
(-2.3)
A 		51
C 59.1
(-2.7)
A 		56.3
(-3)
A 		63.9
(-2.1)
A 		107.4
(3)
A 		51
avr 59.3
(-2) 		57.2
(-2.4) 		54.1
(-3) 		84.1
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 231
1 2 3 4 5 6 range
A 37.1
(-3)
A 		47.1
(-2.7)
A 		41.8
(-2.8)
A 		233.4
(3)
P 		169.9
(1.1)
P 		35.6
(-3)
A 		198
B 55
(-2)
A 		32.9
(-2.9)
A 		50.9
(-2.2)
A 		188.1
(3)
P 		184.9
(2.9)
P 		29.8
(-3)
A 		158
C 51.9
(-1.6)
A 		65.3
(-1.2)
A 		71.7
(-1)
A 		212.8
(3)
P 		159.9
(1.5)
P 		2.7
(-3)
A 		210
avr 48
(-2.2) 		48.4
(-2.2) 		54.8
(-2) 		211.4
(3) 		171.6
(1.7) 		22.7
(-3) 		189
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 26.7
(3)
A 		4.1
(-2.4)
A 		1.5
(-3)
A 		13.7
(-0.1)
A 		25
B 14.5
(-1.3)
A 		23.8
(3)
A 		21.4
(1.9)
A 		10.9
(-3)
A 		13
C 19.6
(0.3)
A 		16.2
(-3)
A 		22.3
(3)
A 		18.1
(-1.1)
A 		6
avr 20.3
(3) 		14.7
(-2.5) 		15.1
(-2.1) 		14.2
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 6.8
(-3)
A 		16.7
(-1.9)
A 		9.1
(-2.7)
A 		59.2
(3)
P 		51.3
(2.1)
P 		8.7
(-2.8)
A 		52
B 19.1
(-2.2)
A 		10.9
(-3)
A 		12.4
(-2.9)
A 		49.8
(0.6)
P 		75.1
(3)
P 		11.1
(-3)
A 		64
C 19.3
(-0.8)
A 		19.9
(-0.8)
A 		18.2
(-1)
A 		42.8
(1.9)
P 		51.7
(3)
P 		0.9
(-3)
A 		51
avr 15.1
(-2.1) 		15.8
(-2) 		13.2
(-2.3) 		50.6
(2) 		59.4
(3) 		6.9
(-3) 		53
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181738_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16999
Sequence Type Exemplar sequence
Representative Public ID T13C5.2 NCBI
Target Description T13C5.2 /REP_DB=WormBase Gene ID /WP=CE04943 /TR=Q22458 /GB=AAK39288.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076635(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076635 NCBI Caenorhabditis elegans T13C5.2 (T13C5.2) mRNA, complete cds. 11/11 None
SNAP00000030093 ENSEMBL cdna:SNAP chromosome:CEL140:X:6187991:6189380:1 10/11 None
GENEFINDER00000030103 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6187991:6191081:1 10/11 None
T13C5.2 ENSEMBL cdna:known chromosome:CEL140:X:6183464:6189380:1 gene:T13C5.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6180630-6189380(+) 93.89 100.0
Public Domain and Genome References
Gene Title
Ensembl T13C5.2
Entrez Gene 259991 Entrez gene
SwissProt Q22458 EMBL-EBI
WormBase CE30452 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM15603 Hypothetical protein T13C5.2 [Caenorhabditis elegans] ref|NP_509036.2| T13C5.2 [Caenorhabditis elegans] 0.0
blast T16865 hypothetical protein T13C5.2 - Caenorhabditis elegans 0.0
blast CAE68884 Hypothetical protein CBG14850 [Caenorhabditis briggsae] 6.0E-66
blast AAM15603 Hypothetical protein T13C5.2 [Caenorhabditis elegans] ref|NP_509036.2| T13C5.2 [Caenorhabditis elegans] 3.0E-64
blast T16865 hypothetical protein T13C5.2 - Caenorhabditis elegans 3.0E-64
blast AAM15603 Hypothetical protein T13C5.2 [Caenorhabditis elegans] ref|NP_509036.2| T13C5.2 [Caenorhabditis elegans] 4.0E-63
blast T16865 hypothetical protein T13C5.2 - Caenorhabditis elegans 4.0E-63
blast CAE68884 Hypothetical protein CBG14850 [Caenorhabditis briggsae] 5.0E-48
Protein Domains
Database ID Description E-Value
Pfam IPR005044 EMBL-EBI Caenorhabditis protein of unknown function DUF282 1.0E-126
Pfam IPR005044 EMBL-EBI Caenorhabditis protein of unknown function DUF282 2.9E-34
Pfam IPR005044 EMBL-EBI Caenorhabditis protein of unknown function DUF282 1.1E-64
Pfam IPR005044 EMBL-EBI Caenorhabditis protein of unknown function DUF282 1.1E-64
Pfam IPR005044 EMBL-EBI Caenorhabditis protein of unknown function DUF282 2.7E-44
Pfam IPR005044 EMBL-EBI Caenorhabditis protein of unknown function DUF282 8.5E-9
Sequence
Target Sequence 
>C. ELEGANS:181738_AT
caggatcatgcggctgtttacccatgaacagcttatcaatttggagagatcgagtaatta
gttttgatcgagtttgttatgctgagatcgaaagtaatgatctactttctttattatcac
aagtaactgaatggtttgatgcgtctccgcttaacaattttcttattcacattgcaaacc
gtttcggagtcatgcattccgactcaacagcatgcacaacgtgcccgaaggtgtacgata
cagcttgccaaggctttggaataccaagtttaattgattggtgccctcaagcggctgaag
tcggagtcaactattttcttggccttgttgctgctcttccattcttaccagcagattctt
gctcgaccactatcgtttgtccgcccggcacaactcccagagtcaatctattcggttcgt
caattcctgctccaactcccgcaactcttgcatactgtagacaaactggtcctgacgcag
gcacatggtttacaggcgttccaccatttgagattga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGGATCATGCGGCTGTTTACCCAT 184 209 1175 Antisense
TGGTTTGATGCGTCTCCGCTTAACA 184 551 1306 Antisense
TGCCCTCAAGCGGCTGAAGTCGGAG 696 583 1456 Antisense
GGAGTCAACTATTTTCTTGGCCTTG 598 517 1477 Antisense
TGCTCTTCCATTCTTACCAGCAGAT 441 579 1506 Antisense
TACCAGCAGATTCTTGCTCGACCAC 111 651 1520 Antisense
AATCTATTCGGTTCGTCAATTCCTG 66 169 1579 Antisense
CTCCCGCAACTCTTGCATACTGTAG 528 233 1610 Antisense
AGACAAACTGGTCCTGACGCAGGCA 370 69 1633 Antisense
GCAGGCACATGGTTTACAGGCGTTC 185 311 1651 Antisense
CAGGCGTTCCACCATTTGAGATTGA 603 207 1667 Antisense
Sequence Source Affymetrix Proprietary Database