[Home] | [Total List]

[181737_at]

Description F41G3.4 /REP_DB=WormBase Gene ID /WP=CE01288 /TR=Q20291 /GB=AAA81109.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 17      6grp_cgc > 69      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 9.5
(-3)
A 		20.6
(-0.2)
A 		20.3
(-0.3)
A 		33.3
(3)
A 		24
B 1.3
(-3)
A 		24.8
(3)
A 		14.6
(0.4)
A 		7.1
(-1.5)
A 		24
C 4.5
(-2.7)
A 		2.7
(-2.8)
A 		1
(-3)
A 		68.1
(3)
M 		67
avr 5.1
(-3) 		16
(-0.9) 		12
(-1.7) 		36.2
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 9.8
(-2.5)
A 		1
(-3)
A 		13.1
(-2.3)
A 		28.8
(-1.3)
A 		83.5
(2)
P 		99.1
(3)
P 		98
B 2
(-3)
A 		1.5
(-3)
A 		2.9
(-2.9)
A 		12.5
(-2.5)
A 		81.5
(0.7)
P 		130
(3)
P 		129
C 1.2
(-3)
A 		25.1
(-1.9)
A 		7.6
(-2.7)
A 		4.9
(-2.8)
A 		111.5
(2)
P 		134
(3)
P 		133
avr 4.3
(-3) 		9.2
(-2.7) 		7.9
(-2.8) 		15.4
(-2.4) 		92.2
(1.5) 		121
(3) 		117
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 3.5
(-3)
A 		4.5
(0.3)
A 		5.3
(3)
A 		4.9
(1.7)
A 		2
B 0.4
(-3)
A 		6.1
(3)
A 		3.4
(0.2)
A 		1.5
(-1.8)
A 		6
C 1.5
(-2.4)
A 		0.8
(-2.7)
A 		0.3
(-3)
A 		11.5
(3)
M 		11
avr 1.8
(-3) 		3.8
(-0.1) 		3
(-1.3) 		6
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 1.8
(-2.7)
A 		0.4
(-3)
A 		2.9
(-2.4)
A 		7.3
(-1.3)
A 		25.2
(3)
P 		24.1
(2.7)
P 		25
B 0.7
(-3)
A 		0.5
(-3)
A 		0.7
(-3)
A 		3.3
(-2.7)
A 		33.1
(1.1)
P 		48.5
(3)
P 		48
C 0.4
(-3)
A 		7.7
(-2)
A 		1.9
(-2.8)
A 		1
(-2.9)
A 		36.1
(1.8)
P 		44.9
(3)
P 		45
avr 1
(-3) 		2.9
(-2.7) 		1.8
(-2.9) 		3.9
(-2.5) 		31.5
(1.8) 		39.2
(3) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181737_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4405
Sequence Type Exemplar sequence
Representative Public ID F41G3.4 NCBI
Target Description F41G3.4 /REP_DB=WormBase Gene ID /WP=CE01288 /TR=Q20291 /GB=AAA81109.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062980(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062980 NCBI Caenorhabditis elegans S. cerevisiae FIS1-related family member (fis-1) (fis-1) mRNA, complete cds. 11/11 None
SNAP00000017947 ENSEMBL cdna:SNAP chromosome:CEL140:II:6755116:6755820:1 11/11 None
GENEFINDER00000017964 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6755116:6755820:1 10/11 None
F41G3.4 ENSEMBL cdna:known chromosome:CEL140:II:6755116:6755820:1 gene:F41G3.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6755111-6755816(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol fis-1
Ensembl F41G3.4
Entrez Gene 185630 Entrez gene
SwissProt Q20291 EMBL-EBI
WormBase CE01288 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81109 S. cerevisiae fis1-related protein 1 [Caenorhabditis elegans] ref|NP_495381.1| S. cerevisiae FIS1-related family member (fis-1) [Caenorhabditis elegans] 9.0E-58
blast AAA81109 S. cerevisiae fis1-related protein 1 [Caenorhabditis elegans] ref|NP_495381.1| S. cerevisiae FIS1-related family member (fis-1) [Caenorhabditis elegans] 2.0E-54
blast CAE65961 Hypothetical protein CBG11144 [Caenorhabditis briggsae] 7.0E-31
blast CAE65961 Hypothetical protein CBG11144 [Caenorhabditis briggsae] 2.0E-28
blast CAG04589 unnamed protein product [Tetraodon nigroviridis] 5.0E-13
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495381.1 1 119-141
F41G3.4 1 119-141
SNAP00000017947 1 119-141
GENEFINDER00000017964 1 120-142
Sequence
Target Sequence 
>C. ELEGANS:181737_AT
tcgattctcgactttcataccgaacaggaagaaattctggcggctcgtgctcgatcggtg
tcccgagagaatcagattagtctagccattgttctagttggatcagaggatcggagagaa
atcaaggaaggaattgaaattcttgaagatgtagtcagtgatactgctcatagtgaagat
tcgagagtttgtgttcattatcttgctcttgcacacgctcgtcttaagaactacgacaaa
tcaatcaatttgctcaatgctcttctccgaaccgaaccatcaaacatgcaagctacggaa
cttcgtagagctgttgaaaagaaaatgaaacgtgaaggtcttctgggacttggattgctc
ggcggtgcagtagctgtagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGATTCTCGACTTTCATACCGAAC 515 603 25 Antisense
GTGCTCGATCGGTGTCCCGAGAGAA 193 479 71 Antisense
ATCAGATTAGTCTAGCCATTGTTCT 442 27 95 Antisense
GTCAGTGATACTGCTCATAGTGAAG 589 465 178 Antisense
TTGTGTTCATTATCTTGCTCTTGCA 62 709 213 Antisense
TCTTGCACACGCTCGTCTTAAGAAC 273 617 231 Antisense
ATCAATCAATTTGCTCAATGCTCTT 128 27 264 Antisense
CTCCGAACCGAACCATCAAACATGC 230 233 289 Antisense
AAACATGCAAGCTACGGAACTTCGT 532 123 306 Antisense
AACGTGAAGGTCTTCTGGGACTTGG 122 143 353 Antisense
TGCTCGGCGGTGCAGTAGCTGTAGT 283 579 380 Antisense
Sequence Source Affymetrix Proprietary Database