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[181736_s_at]

Description K05F1.9 /REP_DB=WormBase Gene ID /WP=CE02813 /TR=Q21246 /GB=AAA68716.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 0      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 22.6
(-3)
A 		57.4
(1.4)
A 		56
(1.3)
A 		69.7
(3)
A 		47
B 58.3
(3)
A 		10.9
(-3)
A 		19.3
(-1.9)
A 		36.1
(0.2)
A 		47
C 42.7
(-0.3)
A 		19.3
(-3)
A 		47.1
(0.2)
A 		71.1
(3)
A 		52
avr 41.2
(-0.6) 		29.2
(-3) 		40.8
(-0.7) 		59
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 506
1 2 3 4 5 6 range
A 54.9
(-2.1)
A 		1.9
(-3)
A 		23.1
(-2.6)
A 		105.3
(-1.3)
P 		361.6
(3)
P 		337.1
(2.6)
P 		360
B 8
(-3)
A 		72
(-2.2)
A 		16.1
(-2.9)
A 		98.8
(-1.8)
A 		240.8
(-0)
P 		474.5
(3)
P 		467
C 36.6
(-2.9)
A 		52.9
(-2.7)
A 		32.2
(-3)
A 		126
(-1.8)
A 		246.4
(-0.3)
P 		508.2
(3)
P 		476
avr 33.2
(-2.9) 		42.3
(-2.7) 		23.8
(-3) 		110
(-1.8) 		282.9
(0.7) 		439.9
(3) 		416
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 8.2
(-3)
A 		12.5
(1)
A 		14.6
(3)
A 		10.2
(-1.1)
A 		6
B 18.6
(3)
A 		2.7
(-3)
A 		4.5
(-2.3)
A 		7.7
(-1.1)
A 		16
C 14.1
(1.7)
A 		5.5
(-3)
A 		16.4
(3)
A 		12
(0.6)
A 		11
avr 13.6
(3) 		6.9
(-3) 		11.8
(1.4) 		10
(-0.2) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 176
1 2 3 4 5 6 range
A 10.1
(-2.5)
A 		0.7
(-3)
A 		5
(-2.8)
A 		26.7
(-1.6)
P 		109.1
(3)
P 		82.1
(1.5)
P 		108
B 2.8
(-3)
A 		24
(-2.3)
A 		3.9
(-3)
A 		26.2
(-2.2)
A 		97.8
(0.3)
P 		176.9
(3)
P 		174
C 13.6
(-2.8)
A 		16.1
(-2.7)
A 		8.2
(-3)
A 		25.3
(-2.4)
A 		79.7
(-0.4)
P 		170.1
(3)
P 		162
avr 8.8
(-2.9) 		13.6
(-2.7) 		5.7
(-3) 		26.1
(-2.1) 		95.5
(0.9) 		143
(3) 		137
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181736_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4374
Sequence Type Exemplar sequence
Representative Public ID K05F1.9 NCBI
Target Description K05F1.9 /REP_DB=WormBase Gene ID /WP=CE02813 /TR=Q21246 /GB=AAA68716.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062745(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062745 NCBI Caenorhabditis elegans K05F1.9 (K05F1.9) mRNA, complete cds. 11/11 None
SNAP00000031247 ENSEMBL cdna:SNAP chromosome:CEL140:II:5800081:5801104:-1 11/11 None
GENEFINDER00000031254 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5800081:5801104:-1 11/11 None
K05F1.9 ENSEMBL cdna:known chromosome:CEL140:II:5800060:5801188:-1 gene:K05F1.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5800077-5801101(-) 71.08 100.0
Public Domain and Genome References
Gene Title
Ensembl K05F1.9
Entrez Gene 173982 Entrez gene
SwissProt Q21246 EMBL-EBI
WormBase CE02813 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA68716 Hypothetical protein K05F1.9 [Caenorhabditis elegans] ref|NP_495146.1| K05F1.9 [Caenorhabditis elegans] 6.0E-72
blast CAE63940 Hypothetical protein CBG08519 [Caenorhabditis briggsae] 7.0E-34
blast AAB42259 Hypothetical protein ZK354.7 [Caenorhabditis elegans] ref|NP_500774.1| ZK354.7 [Caenorhabditis elegans] 1.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 1.5E-28
Sequence
Target Sequence 
>C. ELEGANS:181736_S_AT
agaccgaagttttcatcctcaagctcgaaaacacaacggtaacattcacaaaccccaagc
ttggcgatgaagtgaccattgcatcactaaacctgacaaatccgaccaaggatcggtatg
cattcaagatcaagtgcacttcaaaccagcttttcaagatcaagtcaccagttggttata
tcaatccagaggagagcttaacaattccggtctaccactacccagcaactgtcattccgg
agaataataagcactacttcgtggtctactacatcaaggctgcgaacacagtaaaggaaa
agattccagttcgtgatttgtggaaagcggcagcatcatcagaaggaacccgacgtgtct
tcatagacttcaaaaaaccagagctgccaccgactgaagctgaagatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGACCGAAGTTTTCATCCTCAAGCT 283 71 50 Antisense
CATTCACAAACCCCAAGCTTGGCGA 487 215 92 Antisense
GACCATTGCATCACTAAACCTGACA 564 383 123 Antisense
AAGTGCACTTCAAACCAGCTTTTCA 459 157 181 Antisense
GCTTAACAATTCCGGTCTACCACTA 30 293 245 Antisense
CTACCCAGCAACTGTCATTCCGGAG 578 225 267 Antisense
TAAGCACTACTTCGTGGTCTACTAC 501 637 297 Antisense
GGTCTACTACATCAAGGCTGCGAAC 114 503 312 Antisense
GTGGAAAGCGGCAGCATCATCAGAA 461 491 369 Antisense
AAGGAACCCGACGTGTCTTCATAGA 262 161 392 Antisense
CTGCCACCGACTGAAGCTGAAGATG 193 237 433 Antisense
Sequence Source Affymetrix Proprietary Database