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[181734_at]

Description T10B10.9 /REP_DB=WormBase Gene ID /WP=CE23964 /TR=Q9U374 /GB=CAB54309.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 51      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 40.5
(0.5)
A 		52.8
(3)
A 		22.7
(-3)
A 		40.7
(0.6)
A 		30
B 5.2
(-3)
A 		60.2
(3)
A 		11.4
(-2.3)
A 		42.8
(1.1)
A 		55
C 29.5
(3)
A 		13.6
(-1.6)
A 		19.8
(0.2)
A 		8.6
(-3)
A 		21
avr 25.1
(-1.2) 		42.2
(3) 		18
(-3) 		30.7
(0.1) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 24.7
(-1.5)
A 		51.4
(0.8)
A 		32
(-0.9)
A 		78.2
(3)
A 		21.1
(-1.8)
A 		6.5
(-3)
A 		72
B 11.7
(-2.4)
A 		8.6
(-3)
A 		38
(3)
A 		20.8
(-0.5)
A 		29
(1.2)
A 		12.5
(-2.2)
A 		29
C 49.1
(2.1)
A 		10.9
(-2.1)
A 		56.8
(3)
A 		37.5
(0.9)
A 		2.9
(-3)
A 		14
(-1.8)
A 		54
avr 28.5
(0) 		23.6
(-0.8) 		42.3
(2.4) 		45.5
(3) 		17.7
(-1.8) 		11
(-3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 14.8
(3)
A 		11.5
(0.8)
A 		5.9
(-3)
A 		6
(-2.9)
A 		9
B 1.7
(-3)
A 		14.9
(3)
A 		2.7
(-2.5)
A 		9.1
(0.4)
A 		13
C 9.8
(3)
A 		3.9
(-1.3)
A 		6.9
(0.9)
A 		1.5
(-3)
A 		8
avr 8.8
(1.4) 		10.1
(3) 		5.2
(-3) 		5.5
(-2.6) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 4.6
(-2)
A 		18.3
(2.5)
A 		7
(-1.2)
A 		19.8
(3)
A 		6.4
(-1.4)
A 		1.6
(-3)
A 		18
B 4.1
(-2.2)
A 		2.9
(-3)
A 		9.2
(1.2)
A 		5.5
(-1.2)
A 		11.8
(3)
A 		4.7
(-1.8)
A 		9
C 18.2
(3)
A 		3.3
(-2.2)
A 		14.4
(1.7)
A 		7.5
(-0.7)
A 		0.9
(-3)
A 		4.7
(-1.7)
A 		17
avr 9
(1.4) 		8.2
(0.7) 		10.2
(2.4) 		10.9
(3) 		6.4
(-0.8) 		3.7
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181734_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17680
Sequence Type Exemplar sequence
Representative Public ID T10B10.9 NCBI
Target Description T10B10.9 /REP_DB=WormBase Gene ID /WP=CE23964 /TR=Q9U374 /GB=CAB54309.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078118(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078118 NCBI Caenorhabditis elegans T10B10.9 (T10B10.9) mRNA, complete cds. 11/11 A 
T10B10.9.2 ENSEMBL cdna:known chromosome:CEL140:X:15164324:15164891:1 gene:T10B10.9 11/11 A 
T10B10.9.1 ENSEMBL cdna:known chromosome:CEL140:X:15164324:15164778:1 gene:T10B10.9 11/11 A 
T10B10.9.3 ENSEMBL cdna:known chromosome:CEL140:X:15164324:15164892:1 gene:T10B10.9 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009608 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15164323-15164704(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T10B10.9
Entrez Gene 181609 Entrez gene
SwissProt Q9U374 EMBL-EBI
WormBase CE23964 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54309 Hypothetical protein T10B10.9 [Caenorhabditis elegans] ref|NP_510519.1| T10B10.9 [Caenorhabditis elegans] 8.0E-50
Sequence
Target Sequence 
>C. ELEGANS:181734_AT
atggtattgttcccagcaccatacatatttaatggtgggatactaaaaatcgtccgaata
aaagcgggcagcacagccaaagatcgtcatattgtcatgaaatcatcgattctccttctt
ctcatcggatttattctcgtcagagaaaattttctcccgaatgtgactaacgacgaactt
ctggtcatcggaaccaagatgtcgccatcggcaagatttgggtgggggccaccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGTATTGTTCCCAGCACCATACA 18 51 13 Antisense
GTTCCCAGCACCATACATATTTAAT 255 441 21 Antisense
TGGTGGGATACTAAAAATCGTCCGA 100 553 45 Antisense
TCGTCCGAATAAAAGCGGGCAGCAC 144 603 62 Antisense
GGCAGCACAGCCAAAGATCGTCATA 685 535 79 Antisense
CATGAAATCATCGATTCTCCTTCTT 285 211 108 Antisense
TCTTCTCATCGGATTTATTCTCGTC 319 617 129 Antisense
AACTTCTGGTCATCGGAACCAAGAT 503 135 188 Antisense
GAACCAAGATGTCGCCATCGGCAAG 4 345 203 Antisense
GTCGCCATCGGCAAGATTTGGGTGG 246 475 213 Antisense
GGCAAGATTTGGGTGGGGGCCACCG 479 525 222 Antisense
Sequence Source Affymetrix Proprietary Database