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[181732_at]

Description C17A2.6 /REP_DB=WormBase Gene ID /WP=CE08244 /TR=O16532 /GB=AAB66024.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 56      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 12.5
(-0.3)
A 		7.2
(-2.5)
A 		5.9
(-3)
A 		20.4
(3)
A 		15
B 4.4
(-3)
A 		10.5
(-2.1)
A 		47.4
(3)
A 		8.1
(-2.5)
A 		43
C 20.3
(0.5)
A 		30.2
(3)
A 		6.9
(-3)
A 		10.6
(-2)
A 		23
avr 12.4
(-3) 		16
(-0.2) 		20.1
(3) 		13
(-2.5) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 7.7
(-1.8)
A 		4.5
(-3)
A 		18.1
(1.8)
A 		4.4
(-3)
A 		21.6
(3)
A 		9.9
(-1.1)
A 		17
B 1.8
(-3)
A 		7.6
(-2.3)
A 		8.3
(-2.2)
A 		49.3
(3)
A 		7.1
(-2.3)
A 		1.9
(-3)
A 		48
C 5.3
(-3)
A 		7.4
(-2.2)
A 		5.2
(-3)
A 		6.8
(-2.4)
A 		20.9
(3)
A 		11.5
(-0.6)
A 		16
avr 4.9
(-3) 		6.5
(-2.4) 		10.5
(-0.8) 		20.2
(3) 		16.5
(1.5) 		7.8
(-1.9) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 4.5
(3)
A 		1.6
(-2.8)
A 		1.5
(-3)
A 		3
(0)
A 		3
B 1.4
(-3)
A 		2.6
(-2.3)
A 		11
(3)
A 		1.7
(-2.8)
A 		10
C 6.7
(1.3)
A 		8.7
(3)
A 		2.4
(-2.5)
A 		1.8
(-3)
A 		7
avr 4.2
(1.3) 		4.3
(1.5) 		5
(3) 		2.2
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.4
(-2.7)
A 		1.6
(-2.4)
A 		3.9
(0.1)
A 		1.1
(-3)
A 		6.5
(3)
A 		2.4
(-1.6)
A 		5
B 0.6
(-3)
A 		2.5
(-2.1)
A 		2
(-2.3)
A 		13.1
(3)
A 		2.9
(-1.9)
A 		0.7
(-3)
A 		13
C 2
(-2.2)
A 		2.3
(-1.9)
A 		1.3
(-3)
A 		1.4
(-2.9)
A 		6.8
(3)
A 		3.8
(-0.3)
A 		6
avr 1.3
(-3) 		2.1
(-1.8) 		2.4
(-1.4) 		5.2
(2.7) 		5.4
(3) 		2.3
(-1.5) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181732_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4359
Sequence Type Exemplar sequence
Representative Public ID C17A2.6 NCBI
Target Description C17A2.6 /REP_DB=WormBase Gene ID /WP=CE08244 /TR=O16532 /GB=AAB66024.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062265(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062265 NCBI Caenorhabditis elegans C17A2.6 (C17A2.6) mRNA, complete cds. 11/11 None
SNAP00000028366 ENSEMBL cdna:SNAP chromosome:CEL140:II:3837383:3838830:-1 11/11 None
GENEFINDER00000028373 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3837331:3838830:-1 11/11 None
C17A2.6 ENSEMBL cdna:known chromosome:CEL140:II:3837331:3838941:-1 gene:C17A2.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3837329-3838940(-) 100.0 100.0
Public Domain and Genome References
Ensembl C17A2.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494666 C17A2.6 [Caenorhabditis elegans] pir||T31915 hypothetical protein C17A2.6 - Caenorhabditis elegans 0.0
blast CAB04380 Hypothetical protein F41D3.9 [Caenorhabditis elegans] ref|NP_493099.1| F41D3.9 [Caenorhabditis elegans] 1.0E-94
blast CAB05619 Hypothetical protein T15D6.9 [Caenorhabditis elegans] ref|NP_493140.1| T15D6.9 [Caenorhabditis elegans] 2.0E-93
blast CAB05268 Hypothetical protein R05A10.7 [Caenorhabditis elegans] ref|NP_502715.1| R05A10.7 [Caenorhabditis elegans] 1.0E-87
blast CAB04380 Hypothetical protein F41D3.9 [Caenorhabditis elegans] ref|NP_493099.1| F41D3.9 [Caenorhabditis elegans] 2.0E-81
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494666.1 1 41-60
C17A2.6 1 41-60
SNAP00000028366 1 4-23
GENEFINDER00000028373 1 4-23
Sequence
Target Sequence 
>C. ELEGANS:181732_AT
gaacaactggcttgcgtatcacttcaagccgcttatcatagctgaagttatgagagagca
ttcagtcattttatggattgatgcacatattcaaattgtgaagtcgggtttgataaggaa
catatatgaggatgtagctgaaaaacgattgcacggaagctactcttcagttttcggatt
ttcagagacctttcacagtaactatgcggttctgcatccagatgtgctcacttacttccc
atcaaactccattggtttgttgcaaacccaacaacaagtccaagctggctatatttttgt
tccaagaaccacttataccatgcgattcttcaagtggtgggtactatgtgctctgaccga
aagctgtatgagcccaccaggcactcagagaaagtgcaagttcacctcggattccaataa
agtttacgcaaactgtttcagatacgaccagtccatattaaacttgcttctgttgaacga
cttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACAACTGGCTTGCGTATCACTTC 174 353 675 Antisense
GCGTATCACTTCAAGCCGCTTATCA 395 291 688 Antisense
GAAGCTACTCTTCAGTTTTCGGATT 388 341 830 Antisense
CGGATTTTCAGAGACCTTTCACAGT 656 239 849 Antisense
GTAACTATGCGGTTCTGCATCCAGA 606 459 872 Antisense
GCATCCAGATGTGCTCACTTACTTC 500 309 888 Antisense
ACTTCCCATCAAACTCCATTGGTTT 34 103 908 Antisense
AACCACTTATACCATGCGATTCTTC 230 149 981 Antisense
GTGGTGGGTACTATGTGCTCTGACC 399 489 1008 Antisense
TGCAAGTTCACCTCGGATTCCAATA 374 575 1069 Antisense
AACTTGCTTCTGTTGAACGACTTCC 615 137 1135 Antisense
Sequence Source Affymetrix Proprietary Database