[Home] | [Total List]

[181731_at]

Description C06E2.1 /REP_DB=WormBase Gene ID /WP=CE03944 /TR=Q17721 /GB=AAA80416.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 61      4grp_high_8_8 > 59      6grp_highest_nonorm > 71      6grp_total > 61      4grp_total > 60      6grp_highest_sub > 03_04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 188
1 2 3 4 range
A 301.9
(3)
P 		242.3
(0.9)
P 		285.6
(2.4)
P 		128.3
(-3)
A 		174
B 215.6
(0)
P 		270.7
(2.4)
P 		285.9
(3)
P 		143.3
(-3)
P 		143
C 291.2
(2.1)
P 		303.4
(2.5)
P 		316.4
(3)
P 		154
(-3)
P 		162
avr 269.6
(2) 		272.1
(2.1) 		296
(3) 		141.9
(-3) 		154

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 280
1 2 3 4 5 6 range
A 316.6
(-1.3)
P 		297.6
(-1.9)
P 		455.5
(2.6)
P 		469
(3)
P 		398.8
(1)
P 		258.5
(-3)
P 		211
B 244.1
(-2.5)
P 		294.8
(-0.6)
P 		390.5
(3)
P 		367
(2.1)
P 		300.9
(-0.4)
P 		230.8
(-3)
P 		160
C 221.2
(-3)
P 		301.8
(-1.3)
P 		338.8
(-0.5)
P 		501.1
(3)
P 		239.7
(-2.6)
P 		247
(-2.4)
P 		280
avr 260.6
(-2.5) 		298.1
(-1.4) 		394.9
(1.5) 		445.7
(3) 		313.1
(-1) 		245.4
(-3) 		200
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 109.9
(3)
P 		52.6
(-0.8)
P 		74.7
(0.7)
P 		18.8
(-3)
A 		91
B 68.8
(3)
P 		66.9
(2.7)
P 		66.2
(2.6)
P 		30.5
(-3)
P 		38
C 96.4
(2)
P 		87.2
(1.4)
P 		110.3
(3)
P 		26
(-3)
P 		84
avr 91.7
(3) 		68.9
(0.9) 		83.7
(2.3) 		25.1
(-3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 58.4
(-3)
P 		105.9
(1.6)
P 		99.2
(1)
P 		119
(2.9)
P 		120.3
(3)
P 		62.9
(-2.6)
P 		62
B 84.9
(-3)
P 		98.1
(-0.9)
P 		94.8
(-1.4)
P 		97.2
(-1)
P 		122.2
(3)
P 		86.1
(-2.8)
P 		37
C 82
(-1.9)
P 		92.1
(0.8)
P 		86.2
(-0.8)
P 		100.8
(3)
P 		77.6
(-3)
P 		82.7
(-1.7)
P 		23
avr 75.1
(-3) 		98.7
(1.5) 		93.4
(0.5) 		105.7
(2.8) 		106.7
(3) 		77.2
(-2.6) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181731_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16616
Sequence Type Exemplar sequence
Representative Public ID C06E2.1 NCBI
Target Description C06E2.1 /REP_DB=WormBase Gene ID /WP=CE03944 /TR=Q17721 /GB=AAA80416.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077102(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077102 NCBI Caenorhabditis elegans C06E2.1 (C06E2.1) mRNA, complete cds. 11/11 None
SNAP00000017259 ENSEMBL cdna:SNAP chromosome:CEL140:X:8873027:8874571:-1 10/11 None
GENEFINDER00000017263 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8873027:8874571:-1 11/11 None
C06E2.1 ENSEMBL cdna:known chromosome:CEL140:X:8873027:8874571:-1 gene:C06E2.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075171 1/11 Cross Hyb Matching Probes A 
SNAP00000042683 1/11 Cross Hyb Matching Probes None
R10E8.6 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8873025-8874570(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C06E2.1
Entrez Gene 182319 Entrez gene
SwissProt Q17721 EMBL-EBI
WormBase CE03944 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA80416 Hypothetical protein C06E2.1 [Caenorhabditis elegans] ref|NP_509503.1| C06E2.1 [Caenorhabditis elegans] 1.0E-158
blast AAA80416 Hypothetical protein C06E2.1 [Caenorhabditis elegans] ref|NP_509503.1| C06E2.1 [Caenorhabditis elegans] 1.0E-136
blast CAE69375 Hypothetical protein CBG15474 [Caenorhabditis briggsae] 1.0E-61
blast CAE69375 Hypothetical protein CBG15474 [Caenorhabditis briggsae] 6.0E-57
Sequence
Target Sequence 
>C. ELEGANS:181731_AT
tttcctaccaaagcgcctatcgcaattcaaggggaagtggacgttgcctgaagtacatcc
caatccagcactgtataaatatgaatctaacacttttataacatttaacttatcaacttt
cctgaataatttatcgacgtcgagctattgtccttttgtcactgggttcagaggagatgt
agccgaggagcatgttttaccactctcatctgttgttgaacttgctagacgtattctcat
ggactacagtaatcttgagcctgacgaaagaagtcttctgcacattcttctaaccgaagt
gttttcaccgagagtttgtgacgtttgccaaaaagttatggaagatgctcattcatattt
gatacatgctctgtctttgatacatttagaaaatgcaattgtaaaatgcagccgagcgtt
tacaattgaattcgattatttgaaacttcggaaactttttgaggacgtgaagagatacac
atttgaaagaaaactggcaagaatgatgagcaaaatttctgcaaacagtcctgattttcc
tggccaccaatttgactggaatcccagcttcaattccgtaaactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCCTACCAAAGCGCCTATCGCAA 600 665 273 Antisense
GTGGACGTTGCCTGAAGTACATCCC 363 491 309 Antisense
TACATCCCAATCCAGCACTGTATAA 385 643 326 Antisense
GACGTCGAGCTATTGTCCTTTTGTC 590 377 408 Antisense
GAGGAGCATGTTTTACCACTCTCAT 18 405 457 Antisense
ACCACTCTCATCTGTTGTTGAACTT 619 85 471 Antisense
TCTTCTGCACATTCTTCTAACCGAA 482 617 546 Antisense
GATACATGCTCTGTCTTTGATACAT 661 423 633 Antisense
AATGCAGCCGAGCGTTTACAATTGA 291 151 677 Antisense
CAAACAGTCCTGATTTTCCTGGCCA 480 191 794 Antisense
ATCCCAGCTTCAATTCCGTAAACTT 676 37 833 Antisense
Sequence Source Affymetrix Proprietary Database