[Home] | [Total List]

[181730_at]

Description C48B6.9 /REP_DB=WormBase Gene ID /WP=CE08811 /TR=O01515 /GB=AAC48161.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 76      4grp_total > 20      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 142.2
(3)
M 		77.4
(-3)
A 		114.7
(0.5)
A 		125.2
(1.4)
A 		65
B 135
(-0.5)
A 		164.5
(2.2)
A 		107.5
(-3)
A 		173
(3)
P 		66
C 119.2
(-2.7)
A 		138.2
(1.9)
A 		117.8
(-3)
A 		143
(3)
A 		25
avr 132.1
(0.3) 		126.7
(-0.6) 		113.3
(-3) 		147.1
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 187
1 2 3 4 5 6 range
A 151.8
(-1.7)
P 		136
(-2.3)
A 		118.7
(-3)
A 		161
(-1.3)
A 		197.5
(0.1)
P 		272.2
(3)
P 		154
B 138.4
(-3)
M 		184.6
(0.7)
A 		158.4
(-1.4)
P 		180
(0.3)
M 		153.6
(-1.8)
P 		213.3
(3)
P 		75
C 135.8
(-3)
A 		137.9
(-2.9)
M 		160.5
(-2.1)
P 		260.5
(1.4)
P 		182.5
(-1.3)
P 		305.2
(3)
P 		169
avr 142
(-3) 		152.8
(-2.5) 		145.9
(-2.8) 		200.5
(-0.1) 		177.9
(-1.2) 		263.6
(3) 		122
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 51.8
(3)
M 		16.8
(-3)
A 		30
(-0.7)
A 		18.3
(-2.7)
A 		35
B 43.1
(3)
A 		40.6
(2.2)
A 		24.9
(-3)
A 		36.9
(1)
P 		18
C 39.5
(2.5)
A 		39.7
(2.5)
A 		41
(3)
A 		24.1
(-3)
A 		17
avr 44.8
(3) 		32.4
(-1) 		32
(-1.2) 		26.4
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 28
(-2.7)
P 		48.4
(0.3)
A 		25.9
(-3)
A 		40.8
(-0.8)
A 		59.6
(2)
P 		66.3
(3)
P 		40
B 48.2
(-1.6)
M 		61.4
(0.4)
A 		38.5
(-3)
P 		47.7
(-1.7)
M 		62.4
(0.5)
P 		79.5
(3)
P 		41
C 50.3
(-2.1)
A 		42.1
(-2.9)
M 		40.8
(-3)
P 		52.4
(-1.9)
P 		59.1
(-1.2)
P 		102.2
(3)
P 		61
avr 42.2
(-2.1) 		50.6
(-1) 		35.1
(-3) 		47
(-1.5) 		60.4
(0.2) 		82.7
(3) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181730_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1669
Sequence Type Exemplar sequence
Representative Public ID C48B6.9 NCBI
Target Description C48B6.9 /REP_DB=WormBase Gene ID /WP=CE08811 /TR=O01515 /GB=AAC48161.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059574(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059574 NCBI Caenorhabditis elegans C48B6.9 (C48B6.9) mRNA, complete cds. 11/11 None
C48B6.9 ENSEMBL cdna:known chromosome:CEL140:I:6932552:6933591:-1 gene:C48B6.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000021306 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6932482-6933522(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C48B6.9
Entrez Gene 183573 Entrez gene
SwissProt O01515 EMBL-EBI
WormBase CE08811 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491975 C48B6.9 [Caenorhabditis elegans] gb|AAC48161.1| Hypothetical protein C48B6.9 [Caenorhabditis elegans] 1.0E-135
blast CAE67282 Hypothetical protein CBG12730 [Caenorhabditis briggsae] 3.0E-88
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491975.1 4 80-102,139-161,182-204,219-241
C48B6.9 4 80-102,139-161,182-204,219-241
Sequence
Target Sequence 
>C. ELEGANS:181730_AT
gtcacccatcagttctcgatttgaacagcgaaaaccgagtaatggaccgaaaaacggttc
actggaatatgcttctcctcctcttcatgtcagtttgctcggcattattcaccgttgttg
ctctacaattccacttttcaaatgccgaacgatttcttcgcaccgcaaaatcaccggcat
cggcatatcgaggagtaatcgatgtcattcgggatgtcatcgcctcattcgacgtggcaa
tcgtgattctgtcgattctggcattctttgtgtctgctcttcaattactattcctgatga
agatagtaaaacagacacaacaaccggatgatattgatgtggcacttcgatacatcaaat
caaccagctttttaagaattgtggcattctcgttttggttcgcatcaataatagtcttcg
tgatcgtgctaatgctcacagtctcaattgacccatcgcgaagtttggcctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCACCCATCAGTTCTCGATTTGAA 668 465 188 Antisense
GTTTGCTCGGCATTATTCACCGTTG 244 451 280 Antisense
GTTGCTCTACAATTCCACTTTTCAA 693 437 304 Antisense
AATGCCGAACGATTTCTTCGCACCG 445 167 328 Antisense
TGTCATTCGGGATGTCATCGCCTCA 328 559 390 Antisense
CATCGCCTCATTCGACGTGGCAATC 558 211 405 Antisense
GTGTCTGCTCTTCAATTACTATTCC 410 487 457 Antisense
TTGTGGCATTCTCGTTTTGGTTCGC 584 707 566 Antisense
AGTCTTCGTGATCGTGCTAATGCTC 592 59 600 Antisense
TGCTCACAGTCTCAATTGACCCATC 332 581 620 Antisense
TTGACCCATCGCGAAGTTTGGCCTC 325 703 635 Antisense
Sequence Source Affymetrix Proprietary Database