[Home] | [Total List]

[181729_at]

Description B0281.8 /REP_DB=WormBase Gene ID /WP=CE07718 /TR=O16616 /GB=AAB66086.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 42      4grp_total > 13      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 30.9
(1)
A 		13.7
(-1.4)
A 		2.5
(-3)
A 		45.2
(3)
A 		43
B 23.3
(3)
A 		12.1
(-3)
A 		12.8
(-2.6)
A 		15.5
(-1.2)
A 		11
C 14.7
(-2.1)
A 		15.7
(-2)
A 		6.3
(-3)
A 		65.3
(3)
A 		59
avr 23
(-0.3) 		13.8
(-1.9) 		7.2
(-3) 		42
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 11.2
(-1)
A 		7.3
(-2.2)
A 		24.1
(3)
A 		15.8
(0.4)
A 		6.5
(-2.5)
A 		4.8
(-3)
A 		19
B 16.3
(2.7)
A 		10
(0.3)
A 		17.1
(3)
A 		14.9
(2.1)
A 		14
(1.8)
A 		1.6
(-3)
A 		16
C 12.8
(1.1)
A 		17.7
(3)
A 		15.7
(2.2)
A 		10.7
(0.3)
A 		2.6
(-2.8)
A 		2
(-3)
A 		16
avr 13.4
(0.9) 		11.7
(0.3) 		19
(3) 		13.8
(1.1) 		7.7
(-1.2) 		2.8
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 11.3
(3)
A 		3
(-1.7)
A 		0.7
(-3)
A 		6.6
(0.3)
A 		11
B 7.4
(3)
A 		3
(-3)
A 		3
(-3)
A 		3.3
(-2.6)
A 		4
C 4.9
(-1.2)
A 		4.5
(-1.4)
A 		2.2
(-3)
A 		11
(3)
A 		9
avr 7.9
(3) 		3.5
(-1.5) 		2
(-3) 		7
(2.1) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 2.1
(-1.7)
A 		2.6
(-1)
A 		5.3
(3)
A 		4
(1.1)
A 		2
(-1.8)
A 		1.2
(-3)
A 		4
B 5.7
(3)
A 		3.3
(0.2)
A 		4.1
(1.1)
A 		3.9
(0.9)
A 		5.7
(3)
A 		0.6
(-3)
A 		5
C 4.7
(2.1)
A 		5.4
(3)
A 		4
(1.2)
A 		2.2
(-1.1)
A 		0.9
(-2.7)
A 		0.7
(-3)
A 		5
avr 4.2
(2.5) 		3.8
(1.9) 		4.5
(3) 		3.4
(1.2) 		2.9
(0.4) 		0.8
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181729_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4088
Sequence Type Exemplar sequence
Representative Public ID B0281.8 NCBI
Target Description B0281.8 /REP_DB=WormBase Gene ID /WP=CE07718 /TR=O16616 /GB=AAB66086.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061833(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061833 NCBI Caenorhabditis elegans B0281.8 (B0281.8) mRNA, complete cds. 11/11 None
GENEFINDER00000033221 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2311491:2313891:-1 11/11 None
B0281.8 ENSEMBL cdna:known chromosome:CEL140:II:2311491:2312848:-1 gene:B0281.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2311489-2312847(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0281.8
Entrez Gene 181901 Entrez gene
SwissProt O16616 EMBL-EBI
WormBase CE07718 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB66086 Hypothetical protein B0281.8 [Caenorhabditis elegans] ref|NP_494234.1| B0281.8 [Caenorhabditis elegans] 1.0E-173
blast AAB66086 Hypothetical protein B0281.8 [Caenorhabditis elegans] ref|NP_494234.1| B0281.8 [Caenorhabditis elegans] 1.0E-172
blast AAB66082 Hypothetical protein B0281.3 [Caenorhabditis elegans] ref|NP_494232.1| B0281.3 [Caenorhabditis elegans] 2.0E-65
blast AAB66146 Hypothetical protein ZK1240.5 [Caenorhabditis elegans] ref|NP_494237.1| ZK1240.5 [Caenorhabditis elegans] 3.0E-65
blast AAB66146 Hypothetical protein ZK1240.5 [Caenorhabditis elegans] ref|NP_494237.1| ZK1240.5 [Caenorhabditis elegans] 4.0E-65
blast AAB66082 Hypothetical protein B0281.3 [Caenorhabditis elegans] ref|NP_494232.1| B0281.3 [Caenorhabditis elegans] 5.0E-62
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 9.2E-8
Pfam IPR001841 EMBL-EBI Zn-finger, RING 9.2E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000033221 1 45-62
Sequence
Target Sequence 
>C. ELEGANS:181729_AT
aatgttgctgagtttgcttgcattgaaagcaactgctcttcaaaaaacaagctcatgtgc
caaacttgtgaggaattcggagctcataagggtcatgcaaaagaattgctgataacgaag
actgataaatttcggaaaaaattagaattttggataaatcaattaaaattgaacattcaa
aattgcacagtgaagaaaaatgaactggaagaagcagtggtgaagagtgagcagcttttg
aatataaaagttaaaaagatcaaaaatcattttgataaaatccgtcagtcagttgataag
aaagaaaaaggaataattgatgagacaacggcagaagcaacaagaatacaaaaatttaat
aatgaaaagataacttatttaattgatttgcaagcgagacatgttaaagatattgaggcg
atagagaagcaaaaaaatatgactgatattgatttatacaacaccggaattgatctacct
tgtttttttgggcatttgaatattgaagtgtttcggccagctgaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGTTGCTGAGTTTGCTTGCATTG 179 165 313 Antisense
GCTTGCATTGAAAGCAACTGCTCTT 690 305 328 Antisense
AAACAAGCTCATGTGCCAAACTTGT 303 129 357 Antisense
GTGCCAAACTTGTGAGGAATTCGGA 272 473 369 Antisense
GGAATTCGGAGCTCATAAGGGTCAT 630 531 384 Antisense
GTGGTGAAGAGTGAGCAGCTTTTGA 447 489 529 Antisense
AAAATCCGTCAGTCAGTTGATAAGA 508 131 589 Antisense
GATTTGCAAGCGAGACATGTTAAAG 273 427 697 Antisense
ACAACACCGGAATTGATCTACCTTG 381 111 770 Antisense
GATCTACCTTGTTTTTTTGGGCATT 611 419 784 Antisense
ATTGAAGTGTTTCGGCCAGCTGACA 463 5 814 Antisense
Sequence Source Affymetrix Proprietary Database