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[181728_at]

Description K12H6.3 /REP_DB=WormBase Gene ID /WP=CE20006 /TR=Q9N5H5 /GB=AAF39933.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 02      6grp_cgc > 59      6grp_cgc_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 10.8
(-2.6)
A 		8.9
(-3)
A 		13.5
(-2.1)
A 		41.2
(3)
A 		32
B 16.3
(-1.9)
A 		8.5
(-3)
A 		11.9
(-2.5)
A 		52
(3)
A 		44
C 5.8
(-2.2)
A 		14
(2.1)
A 		4.2
(-3)
A 		15.8
(3)
A 		12
avr 11
(-2.8) 		10.5
(-2.9) 		9.9
(-3) 		36.3
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 4
(-2.9)
A 		2.8
(-3)
A 		53.9
(3)
A 		3.5
(-2.9)
A 		47.5
(2.2)
A 		44.4
(1.9)
A 		51
B 5.7
(-2.7)
A 		4.6
(-2.8)
A 		7.4
(-2.4)
A 		3.5
(-3)
A 		24.1
(-0.1)
A 		46
(3)
A 		43
C 5.5
(-2.8)
A 		13.8
(-1.9)
A 		11.7
(-2.1)
A 		3.6
(-3)
A 		11.3
(-2.1)
A 		57.8
(3)
A 		54
avr 5.1
(-2.8) 		7.1
(-2.5) 		24.3
(-0.3) 		3.5
(-3) 		27.6
(0.2) 		49.4
(3) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 3.9
(-0.1)
A 		1.9
(-3)
A 		3.5
(-0.7)
A 		6
(3)
A 		4
B 5.2
(-0.9)
A 		2.1
(-3)
A 		2.8
(-2.5)
A 		11.1
(3)
A 		9
C 1.9
(-2)
A 		4
(3)
A 		1.5
(-3)
A 		2.7
(-0.1)
A 		3
avr 3.7
(-1.4) 		2.7
(-2.9) 		2.6
(-3) 		6.6
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 0.7
(-3)
A 		1
(-2.9)
A 		11.7
(1.9)
A 		0.9
(-2.9)
A 		14.3
(3)
A 		10.8
(1.5)
A 		14
B 2
(-2.6)
A 		1.5
(-2.8)
A 		1.8
(-2.7)
A 		0.9
(-3)
A 		9.8
(0.3)
A 		17.1
(3)
A 		16
C 2
(-2.6)
A 		4.2
(-1.9)
A 		3
(-2.3)
A 		0.7
(-3)
A 		3.7
(-2)
A 		19.3
(3)
A 		19
avr 1.6
(-2.7) 		2.2
(-2.4) 		5.5
(-1.1) 		0.8
(-3) 		9.3
(0.4) 		15.7
(3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181728_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4352
Sequence Type Exemplar sequence
Representative Public ID K12H6.3 NCBI
Target Description K12H6.3 /REP_DB=WormBase Gene ID /WP=CE20006 /TR=Q9N5H5 /GB=AAF39933.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061971(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061971 NCBI Caenorhabditis elegans FUcosyl Transferase family member (fut-4) (fut-4) mRNA, complete cds. 11/11 None
SNAP00000024508 ENSEMBL cdna:SNAP chromosome:CEL140:II:2812957:2821196:-1 11/11 None
GENEFINDER00000024520 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2819434:2822475:-1 11/11 None
K12H6.3 ENSEMBL cdna:known chromosome:CEL140:II:2819434:2822475:-1 gene:K12H6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2819432-2821568(-) 99.79 100.0
Public Domain and Genome References
Gene Title
Gene Symbol fut-4
Ensembl K12H6.3
Entrez Gene 187342 Entrez gene
SwissProt Q8MQ05 EMBL-EBI
WormBase CE31970 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.15827.1.S1_S_AT fucosyltransferase 6 (alpha (1,3) fucosyltransferase) cfa
DROSOPHILA_2:1629453_AT dm
DROSGENOME1:148794_AT dm
HG-U133_PLUS_2:211885_X_AT fucosyltransferase 6 (alpha (1,3) fucosyltransferase) hs
HG-U133A:211885_X_AT fucosyltransferase 6 (alpha (1,3) fucosyltransferase) hs
HG-U133A_2:211885_X_AT fucosyltransferase 6 (alpha (1,3) fucosyltransferase) hs
HG-U133A:210399_X_AT fucosyltransferase 6 (alpha (1,3) fucosyltransferase) hs
HG-U133_PLUS_2:210399_X_AT fucosyltransferase 6 (alpha (1,3) fucosyltransferase) hs
HG-U133A_2:210399_X_AT fucosyltransferase 6 (alpha (1,3) fucosyltransferase) hs
HG-U133_PLUS_2:211465_X_AT fucosyltransferase 6 (alpha (1,3) fucosyltransferase) hs
HG-U133A:211465_X_AT fucosyltransferase 6 (alpha (1,3) fucosyltransferase) hs
HG-FOCUS:211465_X_AT fucosyltransferase 6 (alpha (1,3) fucosyltransferase) hs
HG-U133A_2:211465_X_AT fucosyltransferase 6 (alpha (1,3) fucosyltransferase) hs
HG-U133_PLUS_2:210398_X_AT fucosyltransferase 6 (alpha (1,3) fucosyltransferase) hs
HG-U133A_2:210398_X_AT fucosyltransferase 6 (alpha (1,3) fucosyltransferase) hs
HG-U133A:210398_X_AT fucosyltransferase 6 (alpha (1,3) fucosyltransferase) hs
HG-U133_PLUS_2:211882_X_AT fucosyltransferase 6 (alpha (1,3) fucosyltransferase) hs
HG-U133A:211882_X_AT fucosyltransferase 6 (alpha (1,3) fucosyltransferase) hs
HG-U133A_2:211882_X_AT fucosyltransferase 6 (alpha (1,3) fucosyltransferase) hs
HUGENEFL:U27333_AT fucosyltransferase 6 (alpha (1,3) fucosyltransferase) hs
HUGENEFL:U27333_S_AT fucosyltransferase 6 (alpha (1,3) fucosyltransferase) hs
U133_X3P:G967208_3P_X_AT fucosyltransferase 6 (alpha (1,3) fucosyltransferase) hs
U133_X3P:G967208_3P_S_AT fucosyltransferase 6 (alpha (1,3) fucosyltransferase) hs
U133_X3P:G967208_3P_A_AT fucosyltransferase 6 (alpha (1,3) fucosyltransferase) hs
U133_X3P:G967198_3P_A_AT fucosyltransferase 6 (alpha (1,3) fucosyltransferase) hs
U133_X3P:G182491_3P_S_AT fucosyltransferase 6 (alpha (1,3) fucosyltransferase) hs
U133_X3P:G182491_3P_A_AT fucosyltransferase 6 (alpha (1,3) fucosyltransferase) hs
U133_X3P:210399_3P_X_AT fucosyltransferase 6 (alpha (1,3) fucosyltransferase) hs
U133_X3P:210398_3P_X_AT fucosyltransferase 6 (alpha (1,3) fucosyltransferase) hs
HG-U95AV2:36289_F_AT fucosyltransferase 6 (alpha (1,3) fucosyltransferase) hs
HG-U95AV2:36290_S_AT fucosyltransferase 6 (alpha (1,3) fucosyltransferase) hs
U133_X3P:HS2.434404.1.S1_3P_X_AT Fucosyltransferase 6 (alpha (1,3) fucosyltransferase) hs
U133_X3P:1565660_3P_AT Fucosyltransferase 6 (alpha (1,3) fucosyltransferase) hs
HG-U133_PLUS_2:1565660_AT Fucosyltransferase 6 (alpha (1,3) fucosyltransferase) hs
HG-U133_PLUS_2:1565661_X_AT Fucosyltransferase 6 (alpha (1,3) fucosyltransferase) hs
HG-U133_PLUS_2:1565659_AT Fucosyltransferase 6 (alpha (1,3) fucosyltransferase) hs
U133_X3P:HS2.434404.1.A1_3P_AT Fucosyltransferase 6 (alpha (1,3) fucosyltransferase) hs
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6486 protein amino acid glycosylation inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8417 fucosyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_494372 FUcosyl Transferase family member (fut-4) [Caenorhabditis elegans] emb|CAD43602.1| alpha-1->3-fucosyltransferase homologue [Caenorhabditis elegans] gb|AAF39933.2| Fucosyl transferase protein 4 [Caenorhabditis elegans] 0.0
blast NP_494372 FUcosyl Transferase family member (fut-4) [Caenorhabditis elegans] emb|CAD43602.1| alpha-1->3-fucosyltransferase homologue [Caenorhabditis elegans] gb|AAF39933.2| Fucosyl transferase protein 4 [Caenorhabditis elegans] 1.0E-129
blast CAE72423 Hypothetical protein CBG19588 [Caenorhabditis briggsae] 1.0E-113
blast CAE72423 Hypothetical protein CBG19588 [Caenorhabditis briggsae] 1.0E-106
blast NP_494823 FUcosyl Transferase family member (fut-6) [Caenorhabditis elegans] emb|CAG32980.1| alpha1,3-fucosyltransferase [Caenorhabditis elegans] gb|AAA81114.2| Fucosyl transferase protein 6 [Caenorhabditis elegans] 1.0E-103
blast NP_494823 FUcosyl Transferase family member (fut-6) [Caenorhabditis elegans] emb|CAG32980.1| alpha1,3-fucosyltransferase [Caenorhabditis elegans] gb|AAA81114.2| Fucosyl transferase protein 6 [Caenorhabditis elegans] 1.0E-96
Protein Domains
Database ID Description E-Value
Pfam IPR001503 EMBL-EBI Glycosyl transferase, family 10 3.0E-44
Pfam IPR001503 EMBL-EBI Glycosyl transferase, family 10 5.0E-36
Pfam IPR001503 EMBL-EBI Glycosyl transferase, family 10 1.1E-9
Pfam IPR001503 EMBL-EBI Glycosyl transferase, family 10 4.5E-32
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494372.2 1 7-29
K12H6.3 1 7-29
GENEFINDER00000024520 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:181728_AT
gacgtcaactcaatctggagcctcaaaacaaagactgccacgtggctcggctccaactgc
aacaccccgaacaatcgaatccaactgatcgggaaaatgatccagaaaggcctggaagcc
gacgtttggggagcctgtggagccccgccgggagcctgtatgggagtacaaaaacggacg
gagccctgtgtccgggagctcattgagccctacaagttttatttagcactggaaaattcg
aattgtgtggattatgtcactgaaaagttctggaaatcgctgggcgatcgaatggctgtg
ccaattgtgctccagcgggaagttgtgcgacagctcggagtcccggatcccgcgtacatt
tctgtggacgattttcagaatctggaggagtttgtggattttgtggaaaaggtcgggagt
gaaaaggatttttatttgaaatttcacgagtggaggaaggattatagggtaatattcgac
aacgggttctcaggatggtgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGTCAACTCAATCTGGAGCCTCA 105 379 322 Antisense
AACAAAGACTGCCACGTGGCTCGGC 392 135 348 Antisense
TGCAACACCCCGAACAATCGAATCC 651 573 379 Antisense
GCCTGGAAGCCGACGTTTGGGGAGC 374 281 431 Antisense
CCCGCCGGGAGCCTGTATGGGAGTA 661 259 465 Antisense
CCCTGTGTCCGGGAGCTCATTGAGC 210 259 505 Antisense
ATCGCTGGGCGATCGAATGGCTGTG 35 37 597 Antisense
ATGGCTGTGCCAATTGTGCTCCAGC 304 53 613 Antisense
GCTCCAGCGGGAAGTTGTGCGACAG 59 299 630 Antisense
ATCCCGCGTACATTTCTGTGGACGA 195 39 668 Antisense
GACAACGGGTTCTCAGGATGGTGCC 46 365 799 Antisense
Sequence Source Affymetrix Proprietary Database