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[181727_at]

Description B0041.3 /REP_DB=WormBase Gene ID /WP=CE07668 /TR=O02055 /GB=AAC24252.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 60      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 74      6grp_total > 60      4grp_total > 10      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 722
1 2 3 4 range
A 443.3
(-3)
P 		534.2
(-2.2)
P 		520.3
(-2.4)
P 		1165
(3)
P 		722
B 554.7
(-2.4)
P 		547.2
(-2.5)
P 		510.4
(-3)
P 		981.8
(3)
P 		471
C 489.9
(-3)
P 		562.9
(-2.2)
P 		505.8
(-2.8)
P 		1008
(3)
P 		518
avr 496
(-3) 		548.1
(-2.4) 		512.2
(-2.8) 		1051.6
(3) 		556

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 307
1 2 3 4 5 6 range
A 775.4
(-0)
P 		762.8
(-0.3)
P 		772.8
(-0.1)
P 		927.9
(3)
P 		654.8
(-2.4)
P 		624.2
(-3)
P 		304
B 739.2
(1)
P 		665.8
(-1.6)
P 		751.2
(1.4)
P 		798.3
(3)
P 		707.4
(-0.1)
P 		624
(-3)
P 		174
C 662.9
(-2)
P 		667
(-1.8)
P 		859.1
(3)
P 		853.6
(2.9)
P 		626
(-2.9)
P 		621.3
(-3)
P 		238
avr 725.8
(-0.4) 		698.5
(-1.1) 		794.4
(1.3) 		859.9
(3) 		662.7
(-2) 		623.2
(-3) 		237
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 161.4
(2)
P 		116
(-3)
P 		136
(-0.8)
P 		170.5
(3)
P 		55
B 176.9
(0.9)
P 		135.1
(-1.9)
P 		118.3
(-3)
P 		209.2
(3)
P 		91
C 162.2
(-2.8)
P 		161.8
(-3)
P 		176.3
(3)
P 		170
(0.4)
P 		15
avr 166.8
(0.8) 		137.6
(-3) 		143.5
(-2.2) 		183.2
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 145
1 2 3 4 5 6 range
A 142.9
(-3)
P 		271.3
(3)
P 		168.3
(-1.8)
P 		235.3
(1.3)
P 		197.6
(-0.4)
P 		152
(-2.6)
P 		128
B 257.2
(1.3)
P 		221.6
(-0.8)
P 		182.4
(-3)
P 		211.4
(-1.3)
P 		287.4
(3)
P 		232.7
(-0.1)
P 		105
C 245.7
(3)
P 		203.5
(-0.4)
P 		218.6
(0.8)
P 		171.7
(-3)
P 		202.6
(-0.5)
P 		208
(-0.1)
P 		74
avr 215.3
(0.6) 		232.1
(3) 		189.8
(-3) 		206.1
(-0.7) 		229.2
(2.6) 		197.6
(-1.9) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181727_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1601
Sequence Type Exemplar sequence
Representative Public ID B0041.3 NCBI
Target Description B0041.3 /REP_DB=WormBase Gene ID /WP=CE07668 /TR=O02055 /GB=AAC24252.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059014(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059014 NCBI Caenorhabditis elegans B0041.3 (B0041.3) mRNA, complete cds. 11/11 None
SNAP00000016530 ENSEMBL cdna:SNAP chromosome:CEL140:I:4644681:4645626:1 11/11 None
B0041.3 ENSEMBL cdna:known chromosome:CEL140:I:4644681:4645626:1 gene:B0041.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4644680-4645626(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0041.3
Entrez Gene 172073 Entrez gene
SwissProt O02055 EMBL-EBI
WormBase CE07668 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
16998 cell wall catabolism inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC24252 Hypothetical protein B0041.3 [Caenorhabditis elegans] ref|NP_491415.1| B0041.3 [Caenorhabditis elegans] 1.0E-86
blast CAE74485 Hypothetical protein CBG22236 [Caenorhabditis briggsae] 3.0E-64
blast AAI07590 Unknown (protein for MGC:108236) [Xenopus tropicalis] 2.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR002482 EMBL-EBI Peptidoglycan-binding LysM 1.9E-12
Sequence
Target Sequence 
>C. ELEGANS:181727_AT
gcaacagagttttgtcagccagacgaaagcacattccttgttggttttaatagggttcga
agatacggcacaacccaaagtcaatcttcaccagttacaccatgttcatatacaatttac
caagttcaaaccgatgatacacttgaaagaatagcattaaagcataattgttcggtttca
tctctcgttcgtgcaaacaagctttggtctcccagcgccttgttcatgaagcaattcatt
agaatacccattttcaattcacaacaacctaatctcaaaccatctttgcaagaaactcaa
tgcaaaattgtgcctgccactactgaacgggtcgacag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAACAGAGTTTTGTCAGCCAGACG 408 319 43 Antisense
GCCAGACGAAAGCACATTCCTTGTT 154 279 60 Antisense
GGCACAACCCAAAGTCAATCTTCAC 429 535 109 Antisense
AATCTTCACCAGTTACACCATGTTC 569 169 125 Antisense
GCATAATTGTTCGGTTTCATCTCTC 246 309 204 Antisense
TTTCATCTCTCGTTCGTGCAAACAA 133 673 218 Antisense
TGCAAACAAGCTTTGGTCTCCCAGC 302 577 234 Antisense
CCCATTTTCAATTCACAACAACCTA 353 255 289 Antisense
AACAACCTAATCTCAAACCATCTTT 475 133 305 Antisense
AATGCAAAATTGTGCCTGCCACTAC 622 165 341 Antisense
CTGCCACTACTGAACGGGTCGACAG 311 235 356 Antisense
Sequence Source Affymetrix Proprietary Database