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[181726_at]

Description C18H7.2 /REP_DB=WormBase Gene ID /WP=CE17427 /TR=Q9GZF6 /GB=AAF98608.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 22      6grp_total > 23      4grp_total > 45      6grp_cgc > 61      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 136
(3)
P 		134
(2.9)
P 		49.2
(-3)
A 		93.9
(0.1)
A 		87
B 196.3
(3)
P 		112.1
(-0.6)
P 		99.6
(-1.2)
A 		56.9
(-3)
A 		139
C 190.4
(3)
P 		141.5
(0.5)
P 		73.5
(-3)
P 		73.8
(-3)
A 		117
avr 174.2
(3) 		129.2
(0.3) 		74.1
(-3) 		74.9
(-3) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 175
1 2 3 4 5 6 range
A 176.1
(2.9)
P 		177.6
(3)
P 		154.3
(2.1)
P 		113.2
(0.5)
M 		111.7
(0.4)
A 		24.5
(-3)
A 		153
B 177.6
(3)
P 		143.1
(1.4)
P 		144.4
(1.4)
P 		101.4
(-0.6)
P 		140.8
(1.3)
P 		51.2
(-3)
P 		126
C 199.8
(3)
P 		180.6
(2.3)
P 		196.5
(2.9)
P 		142.4
(0.8)
P 		82.9
(-1.6)
A 		45.9
(-3)
A 		154
avr 184.5
(3) 		167.1
(2.3) 		165.1
(2.2) 		119
(0.3) 		111.8
(-0) 		40.5
(-3) 		144
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 49.5
(3)
P 		29.1
(-0.3)
P 		12.9
(-3)
A 		13.7
(-2.9)
A 		37
B 62.6
(3)
P 		27.7
(-1.1)
P 		23.1
(-1.7)
A 		12.1
(-3)
A 		51
C 63
(3)
P 		40.7
(0.4)
P 		25.6
(-1.4)
P 		12.4
(-3)
A 		51
avr 58.4
(3) 		32.5
(-0.4) 		20.5
(-2) 		12.7
(-3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 32.5
(-0.2)
P 		63.2
(3)
P 		33.6
(-0.1)
P 		28.7
(-0.6)
M 		33.7
(-0.1)
A 		6
(-3)
A 		57
B 61.8
(3)
P 		47.6
(1)
P 		35.1
(-0.8)
P 		26.8
(-1.9)
P 		57.2
(2.4)
P 		19.1
(-3)
P 		43
C 74.1
(3)
P 		55.1
(1.1)
P 		50
(0.5)
P 		28.6
(-1.7)
P 		26.8
(-1.8)
A 		15.4
(-3)
A 		59
avr 56.1
(3) 		55.3
(2.9) 		39.6
(0.7) 		28
(-1) 		39.2
(0.6) 		13.5
(-3) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181726_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10720
Sequence Type Exemplar sequence
Representative Public ID C18H7.2 NCBI
Target Description C18H7.2 /REP_DB=WormBase Gene ID /WP=CE17427 /TR=Q9GZF6 /GB=AAF98608.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171246(10), NM_171247(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171246 NCBI Caenorhabditis elegans INneXin family member (inx-18) (inx-18) mRNA, complete cds. 10/11 None
NM_171247 NCBI Caenorhabditis elegans INneXin family member (inx-18) (inx-18) mRNA, complete cds. 10/11 None
SNAP00000042868 ENSEMBL cdna:SNAP chromosome:CEL140:IV:609139:613101:1 10/11 None
GENEFINDER00000042876 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:605956:613607:1 10/11 None
C18H7.2a ENSEMBL cdna:known chromosome:CEL140:IV:606361:614000:1 gene:C18H7.2 10/11 None
C18H7.2b.1 ENSEMBL cdna:known chromosome:CEL140:IV:606444:614021:1 gene:C18H7.2 10/11 None
C18H7.2b.2 ENSEMBL cdna:known chromosome:CEL140:IV:606444:613127:1 gene:C18H7.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:606449-613165(+) 100.0 100.0
Public Domain and Genome References
Ensembl C18H7.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM81118 Innexin protein 18, isoform a [Caenorhabditis elegans] ref|NP_741294.1| INneXin family member (inx-18) [Caenorhabditis elegans] 0.0
blast AAM81119 Innexin protein 18, isoform b [Caenorhabditis elegans] ref|NP_741295.1| INneXin family member (inx-18) [Caenorhabditis elegans] 0.0
blast T33111 hypothetical protein C18H7.2 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000990 EMBL-EBI Innexin 1.0E-126
Pfam IPR000990 EMBL-EBI Innexin 2.6E-109
Pfam IPR000990 EMBL-EBI Innexin 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741294.1 3 108-130,195-217,291-313
NP_741295.1 3 108-130,195-217,291-313
C18H7.2a 3 108-130,195-217,291-313
C18H7.2b.1 3 108-130,195-217,291-313
C18H7.2b.2 3 108-130,195-217,291-313
SNAP00000042868 3 48-70,135-157,231-253
GENEFINDER00000042876 3 167-189,254-276,350-372
Sequence
Target Sequence 
>C. ELEGANS:181726_AT
ggagcacatgtcctttacgacttgttcatgggaagagaatggagggattctggaaagttc
ccacgagtcacactttgtgattttgaaattcgagttttggggaatgtacatagacatact
gttcaatgtgtgctagtcatcaatatgctcaccgagaaaattttcattttcctgtggctc
tggctaacagttctggcaattgtgacagcgttgaatttgatattttggttcattgcattg
gtttcgaattcttgtcgagaacattttgtttcgaagcatttggatattcagtctgatcag
attagtcgatttgtgcaccggtttcttcgagcagatggggttttcctattacaaatgatt
gcatcgcattctggaaatttgatggccgcaaaagtaagttctctcaaattgttctatttt
gtaaccgaacaactgtggatgatattcgtccgacgaagtggaaaaccagtgatagaggac
aaaattgaggaccgtggatcggtacgaagcacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGCACATGTCCTTTACGACTTGT 74 521 715 Antisense
AAAGTTCCCACGAGTCACACTTTGT 561 121 768 Antisense
GCTAGTCATCAATATGCTCACCGAG 706 301 846 Antisense
GTGGCTCTGGCTAACAGTTCTGGCA 14 493 888 Antisense
GGTTCATTGCATTGGTTTCGAATTC 485 507 941 Antisense
ATTAGTCGATTTGTGCACCGGTTTC 425 13 1015 Antisense
CACCGGTTTCTTCGAGCAGATGGGG 401 201 1030 Antisense
GCAGATGGGGTTTTCCTATTACAAA 185 307 1045 Antisense
GATGGCCGCAAAAGTAAGTTCTCTC 254 405 1095 Antisense
ACTGTGGATGATATTCGTCCGACGA 188 97 1146 Antisense
GGACCGTGGATCGGTACGAAGCACG 569 523 1203 Antisense
Sequence Source Affymetrix Proprietary Database