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[181724_at]

Description K12H6.2 /REP_DB=WormBase Gene ID /WP=CE20005 /TR=Q9N5H7 /GB=AAF39932.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 24      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 5.8
(-3)
A 		7.5
(-2.8)
A 		66.6
(3)
A 		57.2
(2.1)
A 		61
B 3.7
(-3)
A 		20.3
(-1)
A 		47.3
(2.2)
A 		54.4
(3)
A 		51
C 17.7
(-3)
A 		19.5
(-2.9)
A 		23
(-2.6)
A 		91.1
(3)
A 		73
avr 9.1
(-3) 		15.8
(-2.3) 		45.6
(0.7) 		67.6
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 28
(-2.7)
A 		45.8
(-0.2)
A 		26.1
(-3)
A 		55.4
(1.2)
A 		67.8
(2.9)
A 		68.3
(3)
A 		42
B 25.2
(-1.1)
A 		12
(-2.7)
A 		28
(-0.8)
A 		9.7
(-3)
A 		58.5
(3)
A 		27.2
(-0.8)
A 		49
C 10.6
(-3)
A 		18.2
(-2.4)
A 		11.1
(-3)
A 		57.6
(0.6)
M 		89.1
(3)
A 		63.3
(1)
A 		79
avr 21.3
(-3) 		25.3
(-2.5) 		21.7
(-3) 		40.9
(-0.7) 		71.8
(3) 		52.9
(0.8) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 2.1
(-2.8)
A 		1.6
(-3)
A 		17.4
(3)
A 		8.4
(-0.4)
A 		16
B 1.2
(-3)
A 		5
(-0.8)
A 		10.9
(2.6)
A 		11.6
(3)
A 		10
C 5.9
(-2.8)
A 		5.6
(-3)
A 		8
(-1.5)
A 		15.4
(3)
A 		10
avr 3.1
(-3) 		4.1
(-2.3) 		12.1
(3) 		11.8
(2.8) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 5.2
(-3)
A 		16.3
(1.4)
A 		5.7
(-2.8)
A 		14
(0.5)
A 		20.5
(3)
A 		16.6
(1.5)
A 		15
B 8.8
(-1.2)
A 		4
(-2.6)
A 		6.8
(-1.8)
A 		2.6
(-3)
A 		23.8
(3)
A 		10.2
(-0.8)
A 		21
C 3.9
(-2.7)
A 		5.6
(-2.4)
A 		2.8
(-3)
A 		11.6
(-1)
M 		28.8
(3)
A 		21.2
(1.2)
A 		26
avr 6
(-2.7) 		8.6
(-1.9) 		5.1
(-3) 		9.4
(-1.7) 		24.4
(3) 		16
(0.4) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181724_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5933
Sequence Type Exemplar sequence
Representative Public ID K12H6.2 NCBI
Target Description K12H6.2 /REP_DB=WormBase Gene ID /WP=CE20005 /TR=Q9N5H7 /GB=AAF39932.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061969(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061969 NCBI Caenorhabditis elegans K12H6.2 (K12H6.2) mRNA, complete cds. 10/11 None
GENEFINDER00000024529 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2812957:2814764:-1 10/11 None
K12H6.2 ENSEMBL cdna:known chromosome:CEL140:II:2812957:2815543:-1 gene:K12H6.2 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024508 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2812955-2815568(-) 98.99 100.0
Public Domain and Genome References
Gene Title
Ensembl K12H6.2
Entrez Gene 187341 Entrez gene
SwissProt Q9N5H7 EMBL-EBI
WormBase CE35997 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494370 K12H6.2 [Caenorhabditis elegans] gb|AAF39932.2| Hypothetical protein K12H6.2 [Caenorhabditis elegans] 1.0E-151
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494370.2 2 162-184,204-226
K12H6.2 2 162-184,204-226
GENEFINDER00000024529 2 162-184,204-226
Sequence
Target Sequence 
>C. ELEGANS:181724_AT
taccatgcccctcagatatgtgatccttctctacgtctccctaactgcgaaaccatgtga
aaatgacctaaaaagtcaatttcagctgtattcaacgcgtacttcaaaggagaatgacga
tgaggtgaaaattttaactacccaaaatattattttttcaacaaaaaacccgcctattca
gactcgagtcacctgggaatgggagtactgtggctctgacgtcatcaagcagtggtgtga
taagggagatcgactgttttttgagatgaatgcgaatctcataatcgacgccacccttct
tagtgcaaatgcgactttcacttgcccattttccctttatcacttcacgacggacctgct
tttccagaaaaccagggaatcctggaagttctcccgattcttctatgctacagttggagt
ggtgtctgccgggcttgtggcagtgattgcggtgattatagtcgtcgcctgcgagaaaca
acaccgaaaaatcagcaaaatggctcattggcctaaaaactcgcatttcgtctccgatga
ctactacagcatcaccggacccgatgatagcgtcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACCATGCCCCTCAGATATGTGATC 126 651 387 Antisense
CAAAAAACCCGCCTATTCAGACTCG 335 191 548 Antisense
TACTGTGGCTCTGACGTCATCAAGC 294 647 592 Antisense
GCGAATCTCATAATCGACGCCACCC 96 289 658 Antisense
TGCAAATGCGACTTTCACTTGCCCA 170 577 690 Antisense
TTTCCCTTTATCACTTCACGACGGA 604 667 716 Antisense
GAATCCTGGAAGTTCTCCCGATTCT 441 327 763 Antisense
CCCGATTCTTCTATGCTACAGTTGG 280 261 779 Antisense
GCGGTGATTATAGTCGTCGCCTGCG 499 293 835 Antisense
GCATTTCGTCTCCGATGACTACTAC 159 307 909 Antisense
TCACCGGACCCGATGATAGCGTCGA 628 611 938 Antisense
Sequence Source Affymetrix Proprietary Database