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[181723_at]

Description K07B1.6 /REP_DB=WormBase Gene ID /WP=CE11886 /TR=O01885 /GB=AAB54242.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 66      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 47      6grp_total > 57      4grp_total > 05      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3887
1 2 3 4 range
A 3660.2
(-0.2)
P 		1988.5
(-3)
P 		2012.2
(-3)
P 		5600.7
(3)
P 		3612
B 3335.6
(-0.4)
P 		1714
(-3)
P 		2336.9
(-2)
P 		5409.4
(3)
P 		3695
C 3724
(0.1)
P 		1786
(-3)
P 		2100.4
(-2.5)
P 		5575.8
(3)
P 		3790
avr 3573.3
(-0.2) 		1829.5
(-3) 		2149.8
(-2.5) 		5528.6
(3) 		3699

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2387
1 2 3 4 5 6 range
A 3387.6
(-1)
P 		3694.8
(-0.1)
P 		2698.8
(-3)
P 		3721.1
(0)
P 		2976.8
(-2.2)
P 		4734
(3)
P 		2035
B 3257.5
(-0.8)
P 		3128.7
(-1.2)
P 		3208
(-1)
P 		3427.8
(-0.2)
P 		2628.9
(-3)
P 		4334.5
(3)
P 		1706
C 3216.7
(-1.9)
P 		3261.7
(-1.8)
P 		3373.3
(-1.5)
P 		3595.3
(-0.9)
P 		2813.6
(-3)
P 		5015.4
(3)
P 		2202
avr 3287.3
(-1.5) 		3361.7
(-1.2) 		3093.4
(-2.1) 		3581.4
(-0.5) 		2806.4
(-3) 		4694.6
(3) 		1888
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 909
1 2 3 4 range
A 1332.7
(3)
P 		431.7
(-3)
P 		526
(-2.4)
P 		819.8
(-0.4)
P 		901
B 1063.7
(2.3)
P 		423.3
(-3)
P 		541.5
(-2)
P 		1152.7
(3)
P 		729
C 1232.8
(3)
P 		513.5
(-3)
P 		732.1
(-1.2)
P 		940.2
(0.6)
P 		719
avr 1209.7
(3) 		456.2
(-3) 		599.9
(-1.9) 		970.9
(1.1) 		754

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1091
1 2 3 4 5 6 range
A 624.5
(-2.7)
P 		1314.1
(3)
P 		587.7
(-3)
P 		943.8
(-0.1)
P 		898.3
(-0.4)
P 		1152.6
(1.7)
P 		726
B 1133.5
(-0.5)
P 		1041.4
(-1.1)
P 		779
(-3)
P 		907.9
(-2.1)
P 		1068.1
(-0.9)
P 		1616.3
(3)
P 		837
C 1192.3
(-0.1)
P 		995.3
(-1.3)
P 		858.6
(-2.1)
P 		723
(-3)
P 		910.4
(-1.8)
P 		1678.9
(3)
P 		956
avr 983.4
(-1) 		1116.9
(0) 		741.8
(-3) 		858.2
(-2.1) 		958.9
(-1.2) 		1482.6
(3) 		741
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181723_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11454
Sequence Type Exemplar sequence
Representative Public ID K07B1.6 NCBI
Target Description K07B1.6 /REP_DB=WormBase Gene ID /WP=CE11886 /TR=O01885 /GB=AAB54242.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073016(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073016 NCBI Caenorhabditis elegans K07B1.6a (K07B1.6) mRNA, complete cds. 11/11 None
SNAP00000012090 ENSEMBL cdna:SNAP chromosome:CEL140:V:9345963:9346713:-1 11/11 None
K07B1.6a ENSEMBL cdna:known chromosome:CEL140:V:9345379:9346713:-1 gene:K07B1.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_073017 5/11 Cross Hyb Matching Probes None
GENEFINDER00000012100 7/11 Cross Hyb Matching Probes None
K07B1.6b 2/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
3565833 2 1 NM_073016 181723_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9345962-9346713(-) 100.0 100.0
Public Domain and Genome References
Ensembl K07B1.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB54242 Hypothetical protein K07B1.6a [Caenorhabditis elegans] ref|NP_505417.1| K07B1.6a [Caenorhabditis elegans] 3.0E-62
blast CAE72157 Hypothetical protein CBG19257 [Caenorhabditis briggsae] 2.0E-37
Sequence
Target Sequence 
>C. ELEGANS:181723_AT
ctacggattcgagtcgtcaccatcttcttcgtcatcagacgatgactttcctgtcgttcc
cgaaatgcgtccaaccgacctgttgagtttggccatgaagaagcgtcgtgcattgtacaa
ccagaaggaaaggaacatgcggtgcgaggttttgcaaacctcgtttattactagtttgtg
taagcatatgggggagagtcggaaacgccataggcgtgggggaaagaagcgctccaggag
caatagctcatcgagtgtttgtagtaccaattctgacattacaccctgcggggtggaacc
caataacaacgtcgaacctttggttcagaatgatcaacatcagctgtgcgtcgccgaacc
aatcgccaagaaagccaaaacaagcaacttcatggatcccttcggactggaagatttctt
caagggaattagttcccgatctgttaaaggcaactc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTACGGATTCGAGTCGTCACCATCT 14 223 18 Antisense
TCAGACGATGACTTTCCTGTCGTTC 44 625 52 Antisense
GTCCAACCGACCTGTTGAGTTTGGC 369 1 86 Antisense
AGAAGCGTCGTGCATTGTACAACCA 594 73 116 Antisense
GGAACATGCGGTGCGAGGTTTTGCA 403 527 149 Antisense
GGGAGAGTCGGAAACGCCATAGGCG 183 493 209 Antisense
AGCTCATCGAGTGTTTGTAGTACCA 496 77 262 Antisense
GTACCAATTCTGACATTACACCCTG 564 457 281 Antisense
ATGATCAACATCAGCTGTGCGTCGC 268 45 347 Antisense
TTCATGGATCCCTTCGGACTGGAAG 435 663 406 Antisense
GTTCCCGATCTGTTAAAGGCAACTC 263 441 449 Antisense
Sequence Source Affymetrix Proprietary Database