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[181722_s_at]

Description T01D1.4 /REP_DB=WormBase Gene ID /WP=CE12948 /TR=P91416 /GB=AAB37884.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 94      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 89      6grp_total > 85      4grp_total > 49      6grp_highest_sub > In      6grp_high1_sub > In      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1479
1 2 3 4 range
A 224.9
(-3)
P 		1670.1
(3)
P 		1452
(2.1)
P 		478.1
(-1.9)
P 		1445
B 245.8
(-3)
P 		1704.2
(3)
P 		1694.5
(3)
P 		431.4
(-2.2)
P 		1458
C 301.6
(-3)
P 		1501.5
(3)
P 		1436.4
(2.7)
P 		458.8
(-2.2)
P 		1200
avr 257.4
(-3) 		1625.3
(3) 		1527.6
(2.6) 		456.1
(-2.1) 		1368

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1848
1 2 3 4 5 6 range
A 553.1
(-3)
P 		1558.5
(0.3)
P 		1331.5
(-0.4)
P 		1852.9
(1.3)
P 		1455.3
(0)
P 		2357
(3)
P 		1804
B 509.5
(-3)
P 		951.3
(-1)
P 		1155.3
(-0)
P 		1641.1
(2.2)
P 		1527.9
(1.7)
P 		1815
(3)
P 		1306
C 572.3
(-3)
P 		1086.2
(-1)
P 		1138.1
(-0.8)
P 		1650.5
(1.2)
P 		1841.3
(2)
P 		2103.1
(3)
P 		1531
avr 545
(-3) 		1198.7
(-0.5) 		1208.3
(-0.4) 		1714.8
(1.5) 		1608.2
(1.1) 		2091.7
(3) 		1547
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 431
1 2 3 4 range
A 81.9
(-2.8)
P 		362.5
(2.7)
P 		379.6
(3)
P 		70
(-3)
P 		310
B 78.4
(-3)
P 		420.9
(3)
P 		392.6
(2.5)
P 		91.9
(-2.8)
P 		343
C 99.8
(-2.7)
P 		431.7
(2)
P 		500.6
(3)
P 		77.4
(-3)
P 		423
avr 86.7
(-2.9) 		405
(2.7) 		424.3
(3) 		79.8
(-3) 		345

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 602
1 2 3 4 5 6 range
A 102
(-3)
P 		554.3
(2.8)
P 		290
(-0.6)
P 		469.9
(1.7)
P 		439.1
(1.3)
P 		573.8
(3)
P 		472
B 177.3
(-3)
P 		316.6
(-1.3)
P 		280.6
(-1.8)
P 		434.7
(0.1)
P 		620.8
(2.3)
P 		676.8
(3)
P 		500
C 212.1
(-3)
P 		331.4
(-1.5)
P 		289.7
(-2.1)
P 		331.9
(-1.5)
P 		595.8
(1.7)
P 		704
(3)
P 		492
avr 163.8
(-3) 		400.8
(-0.1) 		286.8
(-1.5) 		412.2
(0.1) 		551.9
(1.8) 		651.5
(3) 		488
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181722_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4515
Sequence Type Exemplar sequence
Representative Public ID T01D1.4 NCBI
Target Description T01D1.4 /REP_DB=WormBase Gene ID /WP=CE12948 /TR=P91416 /GB=AAB37884.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061275(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061275 NCBI Caenorhabditis elegans T01D1.4 (T01D1.4) mRNA, complete cds. 11/11 None
SNAP00000043215 ENSEMBL cdna:SNAP chromosome:CEL140:II:177244:179051:-1 11/11 None
GENEFINDER00000043222 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:177244:179051:-1 11/11 None
T01D1.4 ENSEMBL cdna:known chromosome:CEL140:II:177069:179093:-1 gene:T01D1.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:177243-179051(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T01D1.4
Entrez Gene 173403 Entrez gene
SwissProt P91416 EMBL-EBI
WormBase CE12948 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37884 Hypothetical protein T01D1.4 [Caenorhabditis elegans] ref|NP_493676.1| T01D1.4 [Caenorhabditis elegans] 9.0E-90
blast CAE62796 Hypothetical protein CBG06970 [Caenorhabditis briggsae] 8.0E-85
blast CAE67866 Hypothetical protein CBG13458 [Caenorhabditis briggsae] 1.0E-39
Protein Domains
Database ID Description E-Value
Pfam IPR004313 EMBL-EBI Acireductone dioxygenase, ARD 2.3E-83
Sequence
Target Sequence 
>C. ELEGANS:181722_S_AT
atctggcacatggaaccattcccatgcggagatcgtcgtctcccacaccacgtcttccca
ccaaagaagatcactacaacacagctggggcaactcgctggagttcaatattataaggtg
gaccttgatgacaccgcttcgatgaagaaacgcctttctgcagtgaaaaccgagaagaat
gtaacattcactgatatgttcactgtcagtgagacaatgctcgagttcgatgataagatg
gaacaattctacgagccacaagtacaaaaagaggatgtgatcagtttggtcgtcgaggga
acatgctattatgacgtcgagccggaggatgactcatggattcgtgtgcaggtcgagaag
ggagacttgattgtgattccaaagggattgtctcatcgattcactactactccacagaac
tt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTGGCACATGGAACCATTCCCAT 634 33 19 Antisense
CCATTCCCATGCGGAGATCGTCGTC 518 269 34 Antisense
ATCACTACAACACAGCTGGGGCAAC 483 23 88 Antisense
GCTGGGGCAACTCGCTGGAGTTCAA 528 293 102 Antisense
ACCTTGATGACACCGCTTCGATGAA 6 87 140 Antisense
GAAACGCCTTTCTGCAGTGAAAACC 162 359 165 Antisense
ATGTGATCAGTTTGGTCGTCGAGGG 84 49 293 Antisense
GACGTCGAGCCGGAGGATGACTCAT 261 377 331 Antisense
GATGACTCATGGATTCGTGTGCAGG 98 413 346 Antisense
AAAGGGATTGTCTCATCGATTCACT 540 121 399 Antisense
GATTCACTACTACTCCACAGAACTT 192 431 416 Antisense
Sequence Source Affymetrix Proprietary Database