[Home] | [Total List]

[181721_at]

Description C27C12.1 /REP_DB=WormBase Gene ID /WP=CE05318 /TR=Q18249 /GB=CAA93740.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 76      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 90      6grp_total > 66      4grp_total > 20      6grp_highest_sub > Da      6grp_high1_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 153.1
(-2.2)
P 		142
(-3)
P 		158.5
(-1.8)
P 		227.2
(3)
P 		85
B 148.2
(-0.1)
P 		173.5
(3)
P 		138
(-1.3)
P 		124.1
(-3)
P 		49
C 204
(2.7)
P 		167.1
(-0.8)
P 		143.4
(-3)
P 		207.4
(3)
P 		64
avr 168.4
(0.3) 		160.9
(-0.8) 		146.6
(-3) 		186.2
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 137.9
(-3)
P 		176.7
(1)
P 		156.4
(-1.1)
P 		161
(-0.6)
P 		138.9
(-2.9)
P 		196
(3)
P 		58
B 161.6
(-1.2)
P 		141.8
(-2.9)
P 		169.9
(-0.5)
P 		155.6
(-1.7)
P 		141.2
(-3)
P 		209.7
(3)
P 		69
C 137.9
(-3)
P 		143.6
(-2.6)
P 		150.5
(-2.2)
P 		166
(-1.2)
P 		149.8
(-2.3)
P 		233.1
(3)
P 		95
avr 145.8
(-2.8) 		154
(-2.1) 		158.9
(-1.7) 		160.9
(-1.5) 		143.3
(-3) 		212.9
(3) 		70
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 55.8
(3)
P 		30.8
(-3)
P 		41.4
(-0.5)
P 		33.3
(-2.4)
P 		25
B 47.3
(3)
P 		42.8
(1.7)
P 		32
(-1.4)
P 		26.5
(-3)
P 		21
C 67.5
(3)
P 		48
(-0.6)
P 		50
(-0.2)
P 		35
(-3)
P 		33
avr 56.9
(3) 		40.5
(-0.9) 		41.1
(-0.7) 		31.6
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 25.4
(-3)
P 		62.8
(3)
P 		34.1
(-1.6)
P 		40.8
(-0.5)
P 		41.9
(-0.4)
P 		47.7
(0.6)
P 		37
B 56.2
(-0.6)
P 		47.2
(-2)
P 		41.3
(-3)
P 		41.2
(-3)
P 		57.4
(-0.4)
P 		78.2
(3)
P 		37
C 51.1
(-0.6)
P 		43.8
(-1.6)
P 		38.3
(-2.3)
P 		33.4
(-3)
P 		48.5
(-1)
P 		78
(3)
P 		45
avr 44.2
(-1.7) 		51.3
(-0.3) 		37.9
(-3) 		38.5
(-2.9) 		49.3
(-0.7) 		68
(3) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181721_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17701
Sequence Type Exemplar sequence
Representative Public ID C27C12.1 NCBI
Target Description C27C12.1 /REP_DB=WormBase Gene ID /WP=CE05318 /TR=Q18249 /GB=CAA93740.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078063(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078063 NCBI Caenorhabditis elegans C27C12.1 (C27C12.1) mRNA, complete cds. 11/11 None
SNAP00000037256 ENSEMBL cdna:SNAP chromosome:CEL140:X:14852786:14853671:-1 11/11 None
GENEFINDER00000037265 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14852786:14853671:-1 11/11 None
C27C12.1 ENSEMBL cdna:known chromosome:CEL140:X:14852484:14853671:-1 gene:C27C12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14852785-14853671(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C27C12.1
Entrez Gene 182961 Entrez gene
SwissProt Q18249 EMBL-EBI
WormBase CE05318 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93740 Hypothetical protein C27C12.1 [Caenorhabditis elegans] ref|NP_510464.1| C27C12.1 [Caenorhabditis elegans] 1.0E-148
blast CAA78472 Hypothetical protein R107.6 [Caenorhabditis elegans] ref|NP_499005.2| CLASP family of microtubule-binding proteins family member (cls-2) [Caenorhabditis elegans] sp|P32744|CLS2_CAEEL Kinetochore protein CLASP-2 2.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR010705 EMBL-EBI Mast, C-terminal 6.7E-73
Sequence
Target Sequence 
>C. ELEGANS:181721_AT
ccaaacaatgtgcttgctccagcgctcccgaaacagaatgcactgaatttcaatgggaat
gagcagttgtcacatgaaaatgaagcccactctgaaatccccagcttgctcacatttcaa
gaaaaaggagaagaagacactgttgaagtcactagagataactacaatgaaatcgacaca
gtggaagacttccgctcaattgaaccggcgttggaaaattcaccgaaaattcttgttgac
gattctatggaagcaactcaaacatttatcgaagagacgaatgactttcaaaacgatact
gtgcacagtcttgatggaacacttgagattgaaaatcgtcgattgtgtctcttgggcatg
ctggttgaaatgaaggaaatttgcaaatctgtcaaagttgatcttttgctaaatctcatt
ccagacttggcgccggttgctgtccaggcatgtaattctgcgtcgtcactttcccgcaaa
gaagccatttattgccttgtttatatggtcaaacaagttggcgcagaggaaatggaaaag
tatttggaaccacttaccaccgccaagcgaacactgctccagatctata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAAACAATGTGCTTGCTCCAGCGC 138 277 187 Antisense
AAAATGAAGCCCACTCTGAAATCCC 679 131 263 Antisense
GACTTCCGCTCAATTGAACCGGCGT 508 369 373 Antisense
AAATCGTCGATTGTGTCTCTTGGGC 89 119 519 Antisense
GTCTCTTGGGCATGCTGGTTGAAAT 220 471 533 Antisense
TAAATCTCATTCCAGACTTGGCGCC 569 639 596 Antisense
CCGGTTGCTGTCCAGGCATGTAATT 514 263 619 Antisense
CATGTAATTCTGCGTCGTCACTTTC 180 209 635 Antisense
GTCACTTTCCCGCAAAGAAGCCATT 507 457 651 Antisense
GAAGCCATTTATTGCCTTGTTTATA 365 345 667 Antisense
AAGCGAACACTGCTCCAGATCTATA 357 147 751 Antisense
Sequence Source Affymetrix Proprietary Database