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[181720_at]

Description C43H6.5 /REP_DB=WormBase Gene ID /WP=CE06956 /TR=Q18584 /GB=AAA96083.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 06      4grp_total > 46      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 155
1 2 3 4 range
A 203
(3)
P 		72.7
(-2.8)
A 		74.6
(-2.7)
A 		67.6
(-3)
A 		135
B 143.4
(3)
A 		70.5
(-1.6)
A 		48.5
(-3)
A 		83.5
(-0.8)
A 		95
C 100
(0.8)
P 		124.2
(3)
A 		105.1
(1.3)
A 		57.8
(-3)
A 		66
avr 148.8
(3) 		89.1
(-1.5) 		76.1
(-2.5) 		69.6
(-3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 118.9
(3)
P 		89.5
(-0.1)
A 		75.1
(-1.7)
A 		79.2
(-1.2)
A 		62.4
(-3)
A 		73.6
(-1.8)
A 		57
B 119.9
(3)
P 		95
(1.3)
A 		81
(0.3)
A 		101.7
(1.7)
A 		34.3
(-3)
A 		37.6
(-2.8)
A 		86
C 142.7
(3)
M 		110.3
(1.2)
P 		88.8
(0.1)
A 		32.9
(-3)
A 		85
(-0.2)
A 		82.3
(-0.3)
A 		110
avr 127.2
(3) 		98.3
(0.4) 		81.6
(-1.1) 		71.3
(-2) 		60.6
(-3) 		64.5
(-2.6) 		67
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 73.9
(3)
P 		15.8
(-2.4)
A 		19.5
(-2.1)
A 		9.9
(-3)
A 		64
B 45.7
(3)
A 		17.4
(-1.9)
A 		11.2
(-3)
A 		17.8
(-1.9)
A 		35
C 33.1
(2.2)
P 		35.7
(2.8)
A 		36.6
(3)
A 		9.7
(-3)
A 		27
avr 50.9
(3) 		23
(-1.4) 		22.4
(-1.5) 		12.5
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 21.9
(-0.9)
P 		31.8
(3)
A 		16.4
(-3)
A 		20.1
(-1.6)
A 		18.8
(-2.1)
A 		17.9
(-2.4)
A 		15
B 41.7
(3)
P 		31.6
(0.8)
A 		19.7
(-1.7)
A 		26.9
(-0.2)
A 		13.9
(-3)
A 		14
(-3)
A 		28
C 52.9
(3)
M 		33.7
(0.5)
P 		22.6
(-0.9)
A 		6.6
(-3)
A 		27.5
(-0.3)
A 		27.6
(-0.3)
A 		46
avr 38.8
(3) 		32.4
(1.2) 		19.6
(-2.5) 		17.9
(-3) 		20.1
(-2.4) 		19.8
(-2.5) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181720_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18293
Sequence Type Exemplar sequence
Representative Public ID C43H6.5 NCBI
Target Description C43H6.5 /REP_DB=WormBase Gene ID /WP=CE06956 /TR=Q18584 /GB=AAA96083.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076033(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076033 NCBI Caenorhabditis elegans C43H6.5 (C43H6.5) mRNA, complete cds. 11/11 None
GENEFINDER00000018910 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2395499:2398647:1 11/11 None
SNAP00000018900 ENSEMBL cdna:SNAP chromosome:CEL140:X:2395992:2398647:1 11/11 None
C43H6.5 ENSEMBL cdna:known chromosome:CEL140:X:2396976:2398647:1 gene:C43H6.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2396975-2398647(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C43H6.5
Entrez Gene 183424 Entrez gene
SwissProt Q18584 EMBL-EBI
WormBase CE35431 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA96083 Hypothetical protein C43H6.5 [Caenorhabditis elegans] ref|NP_508434.2| C43H6.5 [Caenorhabditis elegans] 0.0
blast AAA96083 Hypothetical protein C43H6.5 [Caenorhabditis elegans] ref|NP_508434.2| C43H6.5 [Caenorhabditis elegans] 1.0E-178
blast AAA96083 Hypothetical protein C43H6.5 [Caenorhabditis elegans] ref|NP_508434.2| C43H6.5 [Caenorhabditis elegans] 1.0E-171
blast CAE58884 Hypothetical protein CBG02117 [Caenorhabditis briggsae] 1.0E-162
blast T29334 hypothetical protein F47G3.1 - Caenorhabditis elegans 1.0E-127
blast CAE58884 Hypothetical protein CBG02117 [Caenorhabditis briggsae] 5.0E-98
blast CAE58884 Hypothetical protein CBG02117 [Caenorhabditis briggsae] 1.0E-91
blast T29334 hypothetical protein F47G3.1 - Caenorhabditis elegans 1.0E-24
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508434.2 1 125-147
C43H6.5 1 125-147
GENEFINDER00000018910 2 5-27,312-334
SNAP00000018900 1 147-169
Sequence
Target Sequence 
>C. ELEGANS:181720_AT
aactctcacaattcagcatacgcactttggcttttgctgtttttaattgggttactgttt
ttgacaataatggcgtttttgtgtttcatgtgctggaaacaaaaggacgcaagagttcac
acggaaacttccggcgttcagcagaatgcattcatgagcgagactactcatcgcatagat
caacaatccagaacatctggaaatgggcaacaaattgctccagtagcatcttcgtctggc
ggagccaaccgtacatctcgaaattcgccaatcaatgtccctattgaaaacaatagacca
atcaagaaatttccaatggcaccagttccgaatcgcttaccaatggctgaagaaccatct
ggaggatcggagcatgttgtggaaacaggcatacttggagctaataatgatgatgatgtt
gaatcggtcagtgctgctccgagagctcaaacaagaacactcccaccaatgccaacgaga
gaaggaacgttccagagtattaatacgagagatggtagcaccatgaggacacgaagaaat
aaagaactatttgagcgacctgtgatgcatgttcttgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTCTCACAATTCAGCATACGCAC 566 139 412 Antisense
GCATACGCACTTTGGCTTTTGCTGT 42 309 427 Antisense
GGCGTTTTTGTGTTTCATGTGCTGG 587 541 483 Antisense
ACTTCCGGCGTTCAGCAGAATGCAT 45 103 538 Antisense
TGCTCCAGTAGCATCTTCGTCTGGC 465 581 627 Antisense
GCCAACCGTACATCTCGAAATTCGC 46 277 655 Antisense
CGAAATTCGCCAATCAATGTCCCTA 668 251 670 Antisense
ATTTCCAATGGCACCAGTTCCGAAT 469 15 720 Antisense
GTTCCGAATCGCTTACCAATGGCTG 674 441 736 Antisense
TGAATCGGTCAGTGCTGCTCCGAGA 695 573 831 Antisense
GCGACCTGTGATGCATGTTCTTGAC 576 289 966 Antisense
Sequence Source Affymetrix Proprietary Database