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[181719_at]

Description T05C12.4 /REP_DB=WormBase Gene ID /WP=CE02316 /TR=Q22225 /GB=CAA91305.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 89      6grp_high1_10_10 > 99      4grp_high_8_8 > 30      6grp_highest_nonorm > 90      6grp_total > 94      4grp_total > 33      6grp_highest_sub > In      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 77.4
(-3)
P 		110.9
(-0.1)
P 		132.9
(1.8)
P 		146.2
(3)
P 		69
B 65.1
(-2.8)
P 		109.9
(3)
P 		88.2
(0.2)
P 		63.2
(-3)
M 		47
C 79.2
(-3)
P 		105.4
(2.1)
P 		105.1
(2)
P 		110.2
(3)
P 		31
avr 73.9
(-3) 		108.7
(3) 		108.7
(3) 		106.5
(2.6) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 94.4
(2.6)
P 		65.6
(-1.4)
P 		94.6
(2.7)
P 		63.6
(-1.7)
P 		96.9
(3)
P 		54.5
(-3)
P 		42
B 56
(-3)
P 		90.4
(-0)
P 		76.1
(-1.3)
P 		86.9
(-0.3)
P 		125.1
(3)
P 		109.3
(1.6)
P 		69
C 54.7
(-3)
P 		98.1
(3)
P 		54.7
(-3)
P 		79
(0.4)
P 		78.5
(0.3)
P 		93.8
(2.4)
P 		43
avr 68.4
(-3) 		84.7
(0.1) 		75.1
(-1.7) 		76.5
(-1.5) 		100.2
(3) 		85.9
(0.3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 28.2
(0)
P 		24.1
(-1.8)
P 		34.8
(3)
P 		21.4
(-3)
P 		13
B 20.8
(0.2)
P 		27.2
(3)
P 		20.4
(0)
P 		13.5
(-3)
M 		14
C 26.2
(-0.5)
P 		30.3
(0.9)
P 		36.6
(3)
P 		18.6
(-3)
P 		18
avr 25.1
(0.4) 		27.2
(1.4) 		30.6
(3) 		17.8
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 17.4
(-1.5)
P 		23.3
(0.8)
P 		20.6
(-0.2)
P 		16.1
(-1.9)
P 		29.2
(3)
P 		13.3
(-3)
P 		16
B 19.5
(-2.8)
P 		30.1
(-0.8)
P 		18.5
(-3)
P 		23
(-2.2)
P 		50.8
(3)
P 		40.8
(1.1)
P 		32
C 20.3
(-0.8)
P 		29.9
(2.5)
P 		13.9
(-3)
P 		15.9
(-2.3)
P 		25.4
(0.9)
P 		31.4
(3)
P 		18
avr 19.1
(-2.5) 		27.8
(0.5) 		17.7
(-3) 		18.3
(-2.8) 		35.1
(3) 		28.5
(0.7) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181719_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3243
Sequence Type Exemplar sequence
Representative Public ID T05C12.4 NCBI
Target Description T05C12.4 /REP_DB=WormBase Gene ID /WP=CE02316 /TR=Q22225 /GB=CAA91305.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063316(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063316 NCBI Caenorhabditis elegans T05C12.4 (T05C12.4) mRNA, complete cds. 11/11 None
SNAP00000002111 ENSEMBL cdna:SNAP chromosome:CEL140:II:8177499:8179730:-1 11/11 None
GENEFINDER00000002121 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8177499:8180289:-1 11/11 None
T05C12.4 ENSEMBL cdna:known chromosome:CEL140:II:8177499:8180302:-1 gene:T05C12.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8177495-8180286(-) 93.33 100.0
Public Domain and Genome References
Gene Title
Ensembl T05C12.4
Entrez Gene 188122 Entrez gene
SwissProt Q22225 EMBL-EBI
WormBase CE32927 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91305 Hypothetical protein T05C12.4 [Caenorhabditis elegans] ref|NP_495717.2| T05C12.4 [Caenorhabditis elegans] 0.0
blast CAE57716 Hypothetical protein CBG00724 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495717.2 5 49-71,92-114,440-462,483-505,552-574
T05C12.4 5 49-71,92-114,440-462,483-505,552-574
SNAP00000002111 4 20-42,366-388,409-431,478-500
GENEFINDER00000002121 5 69-91,112-134,459-481,502-524,571-593
Sequence
Target Sequence 
>C. ELEGANS:181719_AT
gattgctcgttttcatctgcagattggcgttctgttttgttgctttggctcttctttttg
tgatattacccacattttttcttgttgtcgctggcactggatgttacatttatagtgatc
atcctatgaatcgaagtagcgtttcgaataagattggcaaagtagtctccgtaaatgctg
caatcttgttattaatgtcaccatgtatgctggtattttcatgttttactctattctaca
ctcactgtcacgaactgttatgtgctacaattcaacttcaaaatcaacaagcaagaggat
tagtcgatacaaatcatcagagtcttattgaaaattattcaatcaatacaaatcaatgtt
ctcgatcattggctcctgttcaatctctgctcctttcatcacttctattatgtatttcat
tgcttccatgtgtttttgcaatgttcaaacttgtgaagtactattttcgaatgagtagtg
aattttattggaatgctgctgataatttcgctgggagacaattttcaaaacaacaggaat
tcccccgttatcaaagtacag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTGCTCGTTTTCATCTGCAGATT 605 433 1346 Antisense
GATTGGCGTTCTGTTTTGTTGCTTT 29 437 1367 Antisense
GCTTTGGCTCTTCTTTTTGTGATAT 188 305 1387 Antisense
ACCCACATTTTTTCTTGTTGTCGCT 191 91 1413 Antisense
TGTTGTCGCTGGCACTGGATGTTAC 521 561 1428 Antisense
GTAGTCTCCGTAAATGCTGCAATCT 100 457 1507 Antisense
TTTTACTCTATTCTACACTCACTGT 488 675 1569 Antisense
CACTCACTGTCACGAACTGTTATGT 12 199 1584 Antisense
GTATTTCATTGCTTCCATGTGTTTT 578 453 1757 Antisense
GCTGCTGATAATTTCGCTGGGAGAC 560 297 1840 Antisense
GAATTCCCCCGTTATCAAAGTACAG 96 323 1882 Antisense
Sequence Source Affymetrix Proprietary Database