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[181718_at]

Description C13D9.2 /REP_DB=WormBase Gene ID /WP=CE08135 /TR=O16245 /GB=AAB65305.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 39      4grp_total > 36      6grp_cgc > 09      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 24.6
(-3)
A 		39
(1.9)
A 		33.4
(0)
A 		42.1
(3)
A 		18
B 35.2
(3)
A 		15.5
(-3)
A 		27.6
(0.7)
A 		20.3
(-1.5)
A 		20
C 27
(0.9)
A 		37.4
(3)
A 		7.1
(-3)
A 		24.3
(0.4)
P 		30
avr 28.9
(1.7) 		30.6
(3) 		22.7
(-3) 		28.9
(1.7) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 45.8
(2.9)
P 		2.5
(-3)
A 		8.4
(-2.2)
A 		38.3
(1.9)
P 		23.1
(-0.2)
A 		46.5
(3)
A 		44
B 19.9
(0.5)
A 		28.6
(2.1)
P 		6.7
(-1.9)
A 		0.8
(-3)
A 		33.2
(3)
P 		12.2
(-0.9)
A 		32
C 18.2
(-2)
A 		30.6
(2.2)
A 		19.3
(-1.6)
A 		32.9
(3)
A 		15.3
(-3)
A 		16.5
(-2.6)
A 		18
avr 28
(3) 		20.6
(0.3) 		11.5
(-3) 		24
(1.5) 		23.9
(1.5) 		25.1
(1.9) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 9
(3)
A 		8.5
(1.9)
A 		8.7
(2.4)
A 		6.2
(-3)
A 		3
B 11.2
(3)
A 		3.8
(-3)
A 		6.4
(-0.9)
A 		4.3
(-2.6)
A 		7
C 8.9
(1.6)
A 		10.8
(3)
A 		2.5
(-3)
A 		4.1
(-1.8)
P 		8
avr 9.7
(3) 		7.7
(0.5) 		5.9
(-1.8) 		4.9
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 8.4
(1.3)
P 		0.9
(-3)
A 		1.8
(-2.5)
A 		9.7
(2.1)
P 		7
(0.5)
A 		11.3
(3)
A 		10
B 6.9
(0)
A 		9.5
(1.2)
P 		1.6
(-2.4)
A 		0.2
(-3)
A 		13.5
(3)
P 		4.5
(-1.1)
A 		13
C 6.8
(-0.4)
A 		9.3
(3)
A 		4.9
(-3)
A 		6.6
(-0.7)
A 		5
(-2.9)
A 		5.5
(-2.2)
A 		4
avr 7.4
(1.8) 		6.6
(1) 		2.8
(-3) 		5.5
(-0.2) 		8.5
(3) 		7.1
(1.5) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181718_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15892
Sequence Type Exemplar sequence
Representative Public ID C13D9.2 NCBI
Target Description C13D9.2 /REP_DB=WormBase Gene ID /WP=CE08135 /TR=O16245 /GB=AAB65305.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071944(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071944 NCBI Caenorhabditis elegans Serpentine Receptor, class R family member (srr-5) (srr-5) mRNA, complete cds. 11/11 None
C13D9.2 ENSEMBL cdna:known chromosome:CEL140:V:5007042:5011515:1 gene:C13D9.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031108 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5007041-5011515(+) 99.45 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srr-5
Ensembl C13D9.2
Entrez Gene 182570 Entrez gene
SwissProt O16245 EMBL-EBI
WormBase CE08135 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65305 Serpentine receptor, class r protein 5 [Caenorhabditis elegans] ref|NP_504345.1| Serpentine Receptor, class R family member (srr-5) [Caenorhabditis elegans] 0.0
blast CAE64045 Hypothetical protein CBG08643 [Caenorhabditis briggsae] 1.0E-112
blast CAE64046 Hypothetical protein CBG08644 [Caenorhabditis briggsae] 1.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR004950 EMBL-EBI Caenorhabditis protein of unknown function DUF267 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504345.1 3 64-86,157-179,269-291
C13D9.2 3 64-86,157-179,269-291
Sequence
Target Sequence 
>C. ELEGANS:181718_AT
ggtcgtgcttatggatagtcggtgtaatggctcacgcaatatgtagttcgattaatgaaa
aaatatttttaagctttaatgatatttcactaaaacgagaaattgaatatttcaacgttg
aactagaagaagcccagacaacaaaaactcttcataagtctgatgctctacaaaggtttt
gtcacagacagaaggaattgattggtctagtcagaaaagcgaacaaacatctgggagatt
atactgggacaactccaattgcatgtttcaatgcttgtgtcaatggtacttacatgtggt
ttgggtttcatgattttcctatggactcttcgatttcatcaataattcttaaatataaca
tatttgctgttttgtttatcacattcttctctcttcgaccagcgagcaatgtgcaatttc
aactggcagacactgctcgtatactaatggaaaatgaggaattcggaaaaacaaaagatt
cggaagtagtcaatacttatcacacgatgattgatagatcactcaggcatacagcacggc
tccgagttcatggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTCGTGCTTATGGATAGTCGGTGT 260 503 491 Antisense
GGCTCACGCAATATGTAGTTCGATT 365 539 519 Antisense
AACTCTTCATAAGTCTGATGCTCTA 435 141 636 Antisense
GGGACAACTCCAATTGCATGTTTCA 354 495 736 Antisense
GTGGTTTGGGTTTCATGATTTTCCT 412 489 786 Antisense
TTTTCCTATGGACTCTTCGATTTCA 423 677 804 Antisense
TTTGTTTATCACATTCTTCTCTCTT 405 667 861 Antisense
TCTCTCTTCGACCAGCGAGCAATGT 190 613 878 Antisense
GGCAGACACTGCTCGTATACTAATG 226 537 915 Antisense
AGATCACTCAGGCATACAGCACGGC 474 65 1006 Antisense
TACAGCACGGCTCCGAGTTCATGGT 412 643 1020 Antisense
Sequence Source Affymetrix Proprietary Database