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[181717_at]

Description Y54G9A.4 /REP_DB=WormBase Gene ID /WP=CE19232 /TR=Q9XWH3 /GB=CAA21695.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 57      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 42.7
(-3)
A 		127.9
(3)
P 		104.1
(1.3)
P 		65.7
(-1.4)
A 		85
B 43.7
(-1.3)
A 		78.4
(3)
A 		78.3
(3)
A 		30
(-3)
A 		48
C 80.2
(2.5)
A 		59.1
(-0.8)
A 		83.1
(3)
P 		45.4
(-3)
A 		38
avr 55.5
(-1.8) 		88.5
(3) 		88.5
(3) 		47
(-3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 43.5
(-3)
A 		80.2
(0.2)
P 		112.1
(3)
P 		53.2
(-2.2)
A 		90.5
(1.1)
P 		97.3
(1.7)
P 		69
B 21.8
(-3)
A 		77.7
(0.5)
M 		117.4
(3)
P 		81.6
(0.7)
P 		117.7
(3)
P 		96.7
(1.7)
P 		96
C 27
(-3)
A 		102.2
(1.1)
P 		121.3
(2.1)
P 		57.6
(-1.3)
P 		75.1
(-0.4)
P 		137
(3)
P 		110
avr 30.8
(-3) 		86.7
(0.9) 		116.9
(3) 		64.1
(-0.7) 		94.4
(1.4) 		110.3
(2.5) 		86
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 15.5
(-1.1)
A 		27.8
(3)
P 		27.2
(2.8)
P 		9.6
(-3)
A 		18
B 13.9
(0.5)
A 		19.4
(3)
A 		18.1
(2.4)
A 		6.4
(-3)
A 		13
C 26.5
(2.3)
A 		17
(-0.4)
A 		29
(3)
P 		7.7
(-3)
A 		21
avr 18.6
(0.8) 		21.4
(1.8) 		24.8
(3) 		7.9
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 8
(-3)
A 		28.5
(3)
P 		24.4
(1.8)
P 		13.5
(-1.4)
A 		27.3
(2.6)
P 		23.7
(1.6)
P 		21
B 7.6
(-3)
A 		25.9
(-0.3)
M 		28.5
(0.1)
P 		21.6
(-0.9)
P 		47.8
(3)
P 		36.1
(1.3)
P 		40
C 10
(-3)
A 		31.2
(0.5)
P 		30.9
(0.5)
P 		11.6
(-2.7)
P 		24.3
(-0.6)
P 		45.9
(3)
P 		36
avr 8.5
(-3) 		28.5
(1.5) 		27.9
(1.4) 		15.6
(-1.4) 		33.1
(2.5) 		35.2
(3) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181717_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2784
Sequence Type Exemplar sequence
Representative Public ID Y54G9A.4 NCBI
Target Description Y54G9A.4 /REP_DB=WormBase Gene ID /WP=CE19232 /TR=Q9XWH3 /GB=CAA21695.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064475(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064475 NCBI Caenorhabditis elegans Y54G9A.4 (Y54G9A.4) mRNA, complete cds. 11/11 None
GENEFINDER00000011618 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13712915:13721031:-1 11/11 None
Y54G9A.4 ENSEMBL cdna:known chromosome:CEL140:II:13712915:13715739:-1 gene:Y54G9A.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13712911-13715736(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y54G9A.4
Entrez Gene 190293 Entrez gene
SwissProt Q9XWH3 EMBL-EBI
WormBase CE19232 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
30001 metal ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
46873 metal ion transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21695 Hypothetical protein Y54G9A.4 [Caenorhabditis elegans] ref|NP_496876.1| Y54G9A.4 [Caenorhabditis elegans] 1.0E-171
blast CAE73305 Hypothetical protein CBG20732 [Caenorhabditis briggsae] 1.0E-153
blast CAI46618 Hypothetical protein Y54G9A.10 [Caenorhabditis elegans] ref|NP_001022477.1| Serpentine Receptor, class E (epsilon) family member (sre-46) [Caenorhabditis elegans] 9.0E-99
blast CAH04694 Hypothetical protein C06G8.3b [Caenorhabditis elegans] ref|NP_001026796.1| hypothetical protein C06G8.3 [Caenorhabditis elegans] 3.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR003689 EMBL-EBI Zinc transporter ZIP 1.7E-97
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 9.8E-59
Pfam IPR003689 EMBL-EBI Zinc transporter ZIP 1.7E-97
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496876.1 8 10-32,45-67,87-104,173-192,196-218,230-252,267-289,296-318
Y54G9A.4 8 10-32,45-67,87-104,173-192,196-218,230-252,267-289,296-318
GENEFINDER00000011618 10 80-102,123-145,245-267,280-302,322-339,408-427,431-453,465-487,502-524,531-553
Sequence
Target Sequence 
>C. ELEGANS:181717_AT
taggccatgggcattcacattcaaatgatccaattatggagtccaatgtgacatttccac
gtgcgagactagctactgtaggcagtattttcaatgtggaggggaatttagtggagccgt
gcaagagaagtctagagaactacgacgacgacggtgagggtccggtacgccaatcaatca
tcttcacctcggccttcatccttcacgtcttcttcgaatgctttgcgtttggaattcaag
aggatgcagtttcagtcacgtcgatcttcctgggaatcgccatgcataaggcgatcgtca
tgttttctcttgggatgaagctcacgagaactcatccgcgacgcagttggattgtcgtaa
ttcttattttggttttagcactgtttaacgtgatcggcggaacagctggaattctgatct
ccagctcgaatatgaatcagacgccgaaggatatcacgacggcggttttgatgagcttct
ccctcggcacttttctctatatctccttttttgagatccttgccccagaacgtgccaaca
accactccaacatccttcagtggatcgccagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGGCCATGGGCATTCACATTCAAA 593 653 353 Antisense
GACATTTCCACGTGCGAGACTAGCT 578 369 402 Antisense
GCCAATCAATCATCTTCACCTCGGC 151 277 521 Antisense
AGAGGATGCAGTTTCAGTCACGTCG 46 69 591 Antisense
GATCTTCCTGGGAATCGCCATGCAT 374 419 615 Antisense
AAGGCGATCGTCATGTTTTCTCTTG 434 161 640 Antisense
AACTCATCCGCGACGCAGTTGGATT 649 139 681 Antisense
GGAATTCTGATCTCCAGCTCGAATA 564 533 760 Antisense
GACGGCGGTTTTGATGAGCTTCTCC 530 375 810 Antisense
CTTTTCTCTATATCTCCTTTTTTGA 75 223 842 Antisense
AACATCCTTCAGTGGATCGCCAGTT 671 137 901 Antisense
Sequence Source Affymetrix Proprietary Database