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[181716_at]

Description R11F4.4 /REP_DB=WormBase Gene ID /WP=CE04831 /TR=Q21942 /GB=AAA79752.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 77.1
(0.5)
A 		61.9
(-1.2)
A 		45.2
(-3)
A 		100.1
(3)
A 		55
B 11
(-3)
A 		61.7
(1.7)
A 		23.9
(-1.8)
A 		76.1
(3)
A 		65
C 28.6
(-1.2)
A 		11.8
(-3)
A 		45.3
(0.5)
A 		68.8
(3)
A 		57
avr 38.9
(-2.9) 		45.1
(-2) 		38.1
(-3) 		81.7
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 93.4
(3)
A 		91.3
(2.8)
A 		28.2
(-3)
A 		82.1
(2)
A 		85.4
(2.3)
A 		36.2
(-2.3)
A 		65
B 61.3
(3)
A 		48.3
(0.3)
A 		49.4
(0.6)
A 		32.1
(-3)
A 		50.5
(0.8)
A 		51.1
(0.9)
A 		29
C 39.2
(-0.3)
A 		51.8
(1)
A 		29.1
(-1.2)
A 		58.7
(1.6)
A 		72.7
(3)
A 		11
(-3)
A 		62
avr 64.6
(2.2) 		63.8
(2.1) 		35.6
(-2.5) 		57.6
(1.1) 		69.5
(3) 		32.8
(-3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 28.1
(3)
A 		13.4
(-2.4)
A 		11.8
(-3)
A 		14.7
(-1.9)
A 		16
B 3.5
(-3)
A 		15.2
(2.5)
A 		5.5
(-2.1)
A 		16.2
(3)
A 		13
C 9.5
(-0)
A 		3.4
(-3)
A 		15.8
(3)
A 		11.6
(1)
A 		12
avr 13.7
(2.1) 		10.7
(-3) 		11
(-2.5) 		14.2
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 17.2
(-0.5)
A 		32.5
(3)
A 		6.1
(-3)
A 		20.8
(0.3)
A 		25.8
(1.5)
A 		8.8
(-2.4)
A 		26
B 21.3
(3)
A 		16.1
(0.6)
A 		12
(-1.4)
A 		8.5
(-3)
A 		20.5
(2.6)
A 		19
(1.9)
A 		13
C 14.5
(0.3)
A 		15.8
(0.7)
A 		7.4
(-1.9)
A 		11.8
(-0.5)
A 		23.5
(3)
A 		3.7
(-3)
A 		20
avr 17.7
(0.7) 		21.5
(2.3) 		8.5
(-3) 		13.7
(-0.9) 		23.3
(3) 		10.5
(-2.2) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181716_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4334
Sequence Type Exemplar sequence
Representative Public ID R11F4.4 NCBI
Target Description R11F4.4 /REP_DB=WormBase Gene ID /WP=CE04831 /TR=Q21942 /GB=AAA79752.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) R11F4.4
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
R11F4.4 R11F4.4 /REP_DB=WormBase Gene ID /WP=CE04831 /TR=Q21942 /GB=AAA79752.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4071359-4072082(-) 93.92 100.0
Sequence
Target Sequence 
>C. ELEGANS:181716_AT
ataggcacgttaacagcctgccgactacaatgttcggaggaaattccaaaaattcaaacc
aaccaaaattcaatgttatactttttaataattaaaaaaaaatttcgcgccaagctcacc
ctgaagactgagcctgctgaagaagggacggtcgattacatgtgtttccccgacaaatac
agtagttcacaagaccaccttcacttgtggcgcatccttcgacaagactcacttgtagaa
atctgtgtttgcttagtgacacagtactttgcattcgcatcacaagcctcttcagctgca
gacgaacagtcggctgttggatccgccatgttggcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAGGCACGTTAACAGCCTGCCGAC 316 21 19 Antisense
GCCTGCCGACTACAATGTTCGGAGG 271 283 34 Antisense
AGCTCACCCTGAAGACTGAGCCTGC 663 79 131 Antisense
GACGGTCGATTACATGTGTTTCCCC 42 377 165 Antisense
CATGTGTTTCCCCGACAAATACAGT 346 209 177 Antisense
TACAGTAGTTCACAAGACCACCTTC 607 643 196 Antisense
GCATCCTTCGACAAGACTCACTTGT 123 309 230 Antisense
ACTTTGCATTCGCATCACAAGCCTC 65 103 284 Antisense
GCCTCTTCAGCTGCAGACGAACAGT 96 281 304 Antisense
CGAACAGTCGGCTGTTGGATCCGCC 133 253 321 Antisense
CTGTTGGATCCGCCATGTTGGCTTC 306 239 332 Antisense
Sequence Source Affymetrix Proprietary Database