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[181715_s_at]

Description T19B10.2 /REP_DB=WormBase Gene ID /WP=CE16413 /TR=Q22562 /GB=CAA98547.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 71      4grp_highest_8_8 > 02      4grp_high_8_8 > 54      6grp_highest_nonorm > 26      6grp_total > 72      4grp_total > 57      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8940
1 2 3 4 range
A 874
(-2.7)
P 		8783.5
(3)
P 		8413.1
(2.7)
P 		464.2
(-3)
P 		8319
B 858.1
(-2.8)
P 		7972.1
(2)
P 		9403.7
(3)
P 		553.6
(-3)
P 		8850
C 868.3
(-2.7)
P 		7230
(2.2)
P 		8207.1
(3)
P 		515.6
(-3)
P 		7692
avr 866.8
(-2.7) 		7995.2
(2.5) 		8674.6
(3) 		511.1
(-3) 		8164

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5713
1 2 3 4 5 6 range
A 5515.5
(0.2)
P 		6064.6
(0.8)
P 		7939.5
(3)
P 		7926.9
(3)
P 		6924.6
(1.8)
P 		2826
(-3)
P 		5114
B 5202.3
(-0.5)
P 		6839.9
(1.2)
P 		7400.2
(1.9)
P 		8462.6
(3)
P 		8019.8
(2.5)
P 		2909.2
(-3)
P 		5553
C 4661.7
(-1.4)
P 		6363.2
(0.5)
P 		6899.8
(1.1)
P 		8539.4
(3)
P 		7180
(1.5)
P 		3273.2
(-3)
P 		5266
avr 5126.5
(-0.6) 		6422.6
(0.9) 		7413.2
(2) 		8309.6
(3) 		7374.8
(1.9) 		3002.8
(-3) 		5307
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2792
1 2 3 4 range
A 318.2
(-2.3)
P 		1906.7
(2.2)
P 		2199.4
(3)
P 		68
(-3)
P 		2131
B 273.6
(-2.5)
P 		1968.9
(2.4)
P 		2179.1
(3)
P 		118
(-3)
P 		2061
C 287.4
(-2.6)
P 		2078.7
(1.3)
P 		2860.4
(3)
P 		86.9
(-3)
P 		2774
avr 293.1
(-2.5) 		1984.8
(1.9) 		2413
(3) 		91
(-3) 		2322

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2570
1 2 3 4 5 6 range
A 1016.7
(-1.7)
P 		2156.9
(3)
P 		1729.1
(1.3)
P 		2010.4
(2.4)
P 		2089.6
(2.7)
P 		688.1
(-3)
P 		1469
B 1810.1
(-1)
P 		2276.7
(0.3)
P 		1797
(-1)
P 		2241.4
(0.2)
P 		3258.4
(3)
P 		1084.8
(-3)
P 		2174
C 1727.9
(0.1)
P 		1941.6
(1.1)
P 		1756.1
(0.2)
P 		1717.3
(0)
P 		2323.4
(3)
P 		1095.7
(-3)
P 		1228
avr 1518.2
(-0.9) 		2125.1
(1.4) 		1760.7
(0) 		1989.7
(0.9) 		2557.1
(3) 		956.2
(-3) 		1601
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181715_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12710
Sequence Type Exemplar sequence
Representative Public ID T19B10.2 NCBI
Target Description T19B10.2 /REP_DB=WormBase Gene ID /WP=CE16413 /TR=Q22562 /GB=CAA98547.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073447(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073447 NCBI Caenorhabditis elegans T19B10.2 (T19B10.2) mRNA, complete cds. 11/11 A 
SNAP00000024742 ENSEMBL cdna:SNAP chromosome:CEL140:V:11223893:11225301:1 11/11 None
GENEFINDER00000024756 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11220791:11225301:1 11/11 None
T19B10.2.2 ENSEMBL cdna:known chromosome:CEL140:V:11223889:11225367:1 gene:T19B10.2 11/11 None
T19B10.2.1 ENSEMBL cdna:known chromosome:CEL140:V:11223890:11225422:1 gene:T19B10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11223892-11225301(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T19B10.2
Entrez Gene 179551 Entrez gene
SwissProt Q22562 EMBL-EBI
WormBase CE16413 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98547 Hypothetical protein T19B10.2 [Caenorhabditis elegans] ref|NP_505848.1| T19B10.2 [Caenorhabditis elegans] 0.0
blast CAE75192 Hypothetical protein CBG23138 [Caenorhabditis briggsae] 0.0
blast CAA98548 Hypothetical protein T19B10.1 [Caenorhabditis elegans] emb|CAA98515.1| Hypothetical protein T19B10.1 [Caenorhabditis elegans] ref|NP_505847.1| CYtochrome P450 family member (cyp-29A2) [Caenorhabditis elegans] 0.0
Protein Families
Method ID Description E-Value
p450 CP15_CHICK Animalia; CYP1A5; chi; CP15_CHICK; Gallus gallus; P79761 7.0E-98
Protein Domains
Database ID Description E-Value
Pfam IPR001128 EMBL-EBI Cytochrome P450 8.3E-96
Sequence
Target Sequence 
>C. ELEGANS:181715_S_AT
tctttcctcatgcatccgtaacaagccagctggacagaatctcgcaatggaggctcttct
caatgttggatgccgtaaagttattgctgatacaactggagctgctaccactcaactcaa
gacaggattcgactttgtcaacaatcttattga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTTCCTCATGCATCCGTAACAAG 265 615 909 Antisense
TCATGCATCCGTAACAAGCCAGCTG 624 621 916 Antisense
GCATCCGTAACAAGCCAGCTGGACA 461 309 920 Antisense
AAGCCAGCTGGACAGAATCTCGCAA 272 149 931 Antisense
GAATCTCGCAATGGAGGCTCTTCTC 311 329 945 Antisense
CTCGCAATGGAGGCTCTTCTCAATG 6 233 949 Antisense
TGGAGGCTCTTCTCAATGTTGGATG 98 549 956 Antisense
CTGCTACCACTCAACTCAAGACAGG 40 239 1010 Antisense
CACTCAACTCAAGACAGGATTCGAC 405 197 1017 Antisense
AGGATTCGACTTTGTCAACAATCTT 408 57 1032 Antisense
TCGACTTTGTCAACAATCTTATTGA 532 601 1037 Antisense
Sequence Source Affymetrix Proprietary Database