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[181714_at]

Description T19B10.2 /REP_DB=WormBase Gene ID /WP=CE16413 /TR=Q22562 /GB=CAA98547.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 71      4grp_highest_8_8 > 02      4grp_high_8_8 > 54      6grp_highest_nonorm > 06      6grp_total > 71      4grp_total > 57      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10975
1 2 3 4 range
A 1232.7
(-2.6)
P 		8992
(1.7)
P 		11371.9
(3)
P 		477.6
(-3)
P 		10894
B 1033.6
(-2.7)
P 		9927.4
(2.5)
P 		10821
(3)
P 		451.2
(-3)
P 		10370
C 1102.8
(-2.6)
P 		9790
(2.9)
P 		9956.5
(3)
P 		397
(-3)
P 		9560
avr 1123
(-2.6) 		9569.8
(2.3) 		10716.5
(3) 		441.9
(-3) 		10275

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10256
1 2 3 4 5 6 range
A 8166.9
(0.3)
P 		7961.4
(0.2)
P 		9542
(1.3)
P 		11891.5
(3)
P 		10007.5
(1.6)
P 		3588.9
(-3)
P 		8303
B 7763.7
(0.1)
P 		8654.6
(0.8)
P 		11008.2
(2.4)
P 		11834.5
(3)
P 		10074.8
(1.8)
P 		3341.2
(-3)
P 		8493
C 6802.4
(-1.1)
P 		8769.7
(0.1)
P 		10254
(1)
P 		13597.2
(3)
P 		9698
(0.7)
P 		3615.4
(-3)
P 		9982
avr 7577.7
(-0.3) 		8461.9
(0.3) 		10268.1
(1.5) 		12441.1
(3) 		9926.8
(1.3) 		3515.2
(-3) 		8926
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3403
1 2 3 4 range
A 448.8
(-2.2)
P 		1951.9
(0.9)
P 		2972.8
(3)
P 		69.9
(-3)
P 		2903
B 329.6
(-2.4)
P 		2451.8
(2.9)
P 		2507.5
(3)
P 		96.2
(-3)
P 		2411
C 365
(-2.5)
P 		2814.7
(1.8)
P 		3470.1
(3)
P 		66.9
(-3)
P 		3403
avr 381.1
(-2.4) 		2406.1
(1.8) 		2983.5
(3) 		77.7
(-3) 		2906

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3220
1 2 3 4 5 6 range
A 1505.5
(-1.2)
P 		2831.5
(2.5)
P 		2078.1
(0.4)
P 		3016
(3)
P 		3019.8
(3)
P 		873.8
(-3)
P 		2146
B 2701.4
(0.1)
P 		2880.8
(0.4)
P 		2673.1
(0)
P 		3134.6
(1)
P 		4093.3
(3)
P 		1245.9
(-3)
P 		2847
C 2521.4
(1.1)
P 		2675.9
(1.6)
P 		2609.8
(1.4)
P 		2734.4
(1.7)
P 		3138.1
(3)
P 		1210.3
(-3)
P 		1928
avr 2242.8
(-0.1) 		2796.1
(1.4) 		2453.7
(0.5) 		2961.7
(1.8) 		3417.1
(3) 		1110
(-3) 		2307
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181714_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12710
Sequence Type Exemplar sequence
Representative Public ID T19B10.2 NCBI
Target Description T19B10.2 /REP_DB=WormBase Gene ID /WP=CE16413 /TR=Q22562 /GB=CAA98547.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073447(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073447 NCBI Caenorhabditis elegans T19B10.2 (T19B10.2) mRNA, complete cds. 11/11 A 
SNAP00000024742 ENSEMBL cdna:SNAP chromosome:CEL140:V:11223893:11225301:1 11/11 None
GENEFINDER00000024756 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11220791:11225301:1 11/11 None
T19B10.2.2 ENSEMBL cdna:known chromosome:CEL140:V:11223889:11225367:1 gene:T19B10.2 11/11 None
T19B10.2.1 ENSEMBL cdna:known chromosome:CEL140:V:11223890:11225422:1 gene:T19B10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11223892-11225301(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T19B10.2
Entrez Gene 179551 Entrez gene
SwissProt Q22562 EMBL-EBI
WormBase CE16413 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98547 Hypothetical protein T19B10.2 [Caenorhabditis elegans] ref|NP_505848.1| T19B10.2 [Caenorhabditis elegans] 0.0
blast CAE75192 Hypothetical protein CBG23138 [Caenorhabditis briggsae] 0.0
blast CAA98548 Hypothetical protein T19B10.1 [Caenorhabditis elegans] emb|CAA98515.1| Hypothetical protein T19B10.1 [Caenorhabditis elegans] ref|NP_505847.1| CYtochrome P450 family member (cyp-29A2) [Caenorhabditis elegans] 0.0
Protein Families
Method ID Description E-Value
p450 CP15_CHICK Animalia; CYP1A5; chi; CP15_CHICK; Gallus gallus; P79761 7.0E-98
Protein Domains
Database ID Description E-Value
Pfam IPR001128 EMBL-EBI Cytochrome P450 8.3E-96
Sequence
Target Sequence 
>C. ELEGANS:181714_AT
tacaaagactcggtcatctcctctatctctgaccatatccttatccagtctcgtctctct
ttctgcggagaacgcaagccacaacgtgccgcatctacccgtaactgtcttgccagtcca
tttgttggatatttgagcggacactgcaaggttctcgccaattgtgatgctaagtttgtt
ggacaatgcggacaaaccattccagccacacgcaaggccacttgcgaatgcatcactgaa
gccagagacgatttgaagaagcgtattggatccatcgccaatgtcttcaatgatcttctc
tccggaggacgtgggcttgccatcggatctgccaacaaggtcgatatttgtacatctcaa
atcaagaaacaaatgatcactccagtcaacgattgggtcaatgttattgatactgctctt
tcctcatgcatccgtaacaagccagctggacagaatctcgcaatggaggctcttctcaat
gttggatgccgtaaagttattgctgatacaactggagctgctaccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACAAAGACTCGGTCATCTCCTCTA 74 643 493 Antisense
ATCTCTGACCATATCCTTATCCAGT 367 33 517 Antisense
TGCGGAGAACGCAAGCCACAACGTG 57 583 556 Antisense
GTAACTGTCTTGCCAGTCCATTTGT 404 461 593 Antisense
GAGCGGACACTGCAAGGTTCTCGCC 212 387 627 Antisense
GGTTCTCGCCAATTGTGATGCTAAG 353 507 642 Antisense
CAATGCGGACAAACCATTCCAGCCA 695 181 676 Antisense
AAGGCCACTTGCGAATGCATCACTG 115 163 706 Antisense
GATCCATCGCCAATGTCTTCAATGA 614 415 761 Antisense
GCCATCGGATCTGCCAACAAGGTCG 397 281 811 Antisense
CTGATACAACTGGAGCTGCTACCAC 640 237 995 Antisense
Sequence Source Affymetrix Proprietary Database