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[181712_at]

Description C04G2.10 /REP_DB=WormBase Gene ID /WP=CE05218 /TR=Q17630 /GB=CAA94675.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 50      6grp_total_sub > Increase      6grp_rule_based > S5      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 58.1
(-3)
A 		111.5
(3)
A 		96.9
(1.4)
A 		61.7
(-2.6)
A 		53
B 35.4
(-1.2)
A 		105.6
(2.9)
A 		108.2
(3)
A 		4.2
(-3)
A 		104
C 31.8
(-3)
A 		104.1
(3)
A 		61.5
(-0.5)
A 		39.1
(-2.4)
A 		72
avr 41.8
(-2.4) 		107.1
(3) 		88.9
(1.5) 		35
(-3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 30.2
(-2.6)
A 		34.3
(-2.3)
A 		25.7
(-3)
A 		67.9
(0.6)
A 		85
(2.1)
A 		95.1
(3)
A 		69
B 34.2
(-1.7)
A 		9.8
(-3)
A 		39.3
(-1.4)
A 		109.2
(2.4)
A 		108.1
(2.4)
A 		119.3
(3)
M 		110
C 19.6
(-3)
A 		36.2
(-1.9)
A 		43.6
(-1.4)
A 		98.4
(2.2)
A 		110.6
(3)
A 		87.2
(1.5)
A 		91
avr 28
(-2.9) 		26.8
(-3) 		36.2
(-2.2) 		91.8
(2.2) 		101.2
(3) 		100.5
(2.9) 		74
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 21.2
(1.5)
A 		24.2
(2.6)
A 		25.3
(3)
A 		9
(-3)
A 		16
B 11.3
(-0.5)
A 		26.1
(3)
A 		25.1
(2.8)
A 		0.9
(-3)
A 		25
C 10.5
(-2)
A 		29.9
(3)
A 		21.5
(0.8)
A 		6.6
(-3)
A 		23
avr 14.3
(-0.5) 		26.7
(3) 		24
(2.2) 		5.5
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 5.6
(-3)
A 		12.2
(-1)
A 		5.6
(-3)
A 		17.2
(0.5)
A 		25.6
(3)
A 		23.2
(2.3)
A 		20
B 11.9
(-1.7)
A 		3.3
(-3)
A 		9.5
(-2.1)
A 		28.9
(0.7)
A 		43.9
(2.9)
A 		44.5
(3)
M 		41
C 7.3
(-3)
A 		11
(-2.2)
A 		11.1
(-2.2)
A 		19.8
(-0.4)
A 		35.8
(3)
A 		29.2
(1.6)
A 		29
avr 8.3
(-3) 		8.8
(-2.9) 		8.7
(-2.9) 		22
(0.1) 		35.1
(3) 		32.3
(2.4) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181712_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10252
Sequence Type Exemplar sequence
Representative Public ID C04G2.10 NCBI
Target Description C04G2.10 /REP_DB=WormBase Gene ID /WP=CE05218 /TR=Q17630 /GB=CAA94675.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069438(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069438 NCBI Caenorhabditis elegans C04G2.10 (C04G2.10) mRNA, complete cds. 11/11 None
SNAP00000040141 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10116739:10117992:1 11/11 None
GENEFINDER00000040149 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10116739:10117992:1 11/11 None
C04G2.10 ENSEMBL cdna:known chromosome:CEL140:IV:10116803:10117992:1 gene:C04G2.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10116808-10117998(+) 88.99 100.0
Public Domain and Genome References
Gene Title
Ensembl C04G2.10
Entrez Gene 182234 Entrez gene
SwissProt Q17630 EMBL-EBI
WormBase CE05218 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94675 Hypothetical protein C04G2.10 [Caenorhabditis elegans] ref|NP_501839.1| C04G2.10 [Caenorhabditis elegans] 0.0
blast CAA94675 Hypothetical protein C04G2.10 [Caenorhabditis elegans] ref|NP_501839.1| C04G2.10 [Caenorhabditis elegans] 1.0E-150
blast CAB54446 Hypothetical protein Y48B6A.10 [Caenorhabditis elegans] ref|NP_496965.1| Y48B6A.10 [Caenorhabditis elegans] 6.0E-26
blast CAB54446 Hypothetical protein Y48B6A.10 [Caenorhabditis elegans] ref|NP_496965.1| Y48B6A.10 [Caenorhabditis elegans] 1.0E-24
blast AAF39881 Hypothetical protein H12I13.1 [Caenorhabditis elegans] ref|NP_495212.1| H12I13.1 [Caenorhabditis elegans] 2.0E-19
Sequence
Target Sequence 
>C. ELEGANS:181712_AT
gaagctctcgaagacttggtcgcgctcagatcactcaaaactatcaagaaagagactcca
aactacttgacattcttcgattcttttgttctcacgaacctgccagcctcaactcaagac
aagctcaatcaacttgatccacaatgcccagctactcactaccttggactcctggtcgaa
ctgggatcaaacagtttggacaatacaatgctgacaaccgcagtcgaaggattatcgatt
gtcaagcagcttgtgctctctcttgtcattgcgaagcgacgtttggataccaaccacaat
gacgttcatccagggaacgtgctcgtaaagcgttcagcatcaccgaaaactctgaagtac
accctggatggcaaggtgatccgcatcccttcgcatggattggtcgtcggaattatcgat
ttttcggaggcgtcgtttggcagagccaacggcaattcggacgtgggcttcctcagtttc
attactgaggaaatttcgaaaacattgtcgaaagctgaaaatcggacattccaaacagct
atcgatgggctcaccgatgcaaggagcatcacagccatctac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCTCTCGAAGACTTGGTCGCGC 518 341 400 Antisense
ATTCTTCGATTCTTTTGTTCTCACG 621 11 471 Antisense
GCCAGCCTCAACTCAAGACAAGCTC 62 281 501 Antisense
GGACTCCTGGTCGAACTGGGATCAA 591 523 565 Antisense
TGCTCTCTCTTGTCATTGCGAAGCG 692 579 653 Antisense
AAGCGTTCAGCATCACCGAAAACTC 180 149 727 Antisense
GCATCCCTTCGCATGGATTGGTCGT 106 297 782 Antisense
GATTTTTCGGAGGCGTCGTTTGGCA 565 427 817 Antisense
GCCAACGGCAATTCGGACGTGGGCT 624 275 844 Antisense
AGCTATCGATGGGCTCACCGATGCA 455 79 936 Antisense
TGCAAGGAGCATCACAGCCATCTAC 85 577 957 Antisense
Sequence Source Affymetrix Proprietary Database