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[181710_at]

Description Y54E2A.8 /REP_DB=WormBase Gene ID /WP=CE20307 /TR=Q9XWI7 /GB=CAA21680.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 80.8
(-0.3)
A 		23.3
(-3)
A 		63.4
(-1.1)
A 		151.6
(3)
A 		128
B 104.1
(3)
A 		65.5
(-3)
A 		91.1
(1)
A 		77.5
(-1.1)
A 		39
C 91.8
(-0.2)
A 		119.9
(1.2)
A 		35.1
(-3)
A 		155.8
(3)
A 		121
avr 92.2
(-0.3) 		69.6
(-2.4) 		63.2
(-3) 		128.3
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 261
1 2 3 4 5 6 range
A 93.3
(-1.6)
A 		130.2
(-0.7)
A 		35.6
(-3)
A 		52
(-2.6)
A 		222.1
(1.5)
A 		285.2
(3)
P 		250
B 79.8
(-1.6)
A 		138.7
(-0.1)
A 		26.6
(-3)
A 		109.3
(-0.9)
A 		173.8
(0.8)
A 		260.1
(3)
P 		234
C 24.3
(-3)
A 		117.7
(0.5)
A 		46
(-2.2)
A 		90.1
(-0.5)
A 		119
(0.6)
P 		182.7
(3)
P 		158
avr 65.8
(-2.1) 		128.9
(-0.3) 		36.1
(-3) 		83.8
(-1.6) 		171.6
(0.9) 		242.7
(3) 		207
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 29.4
(3)
A 		5
(-3)
A 		16.6
(-0.1)
A 		22.2
(1.2)
A 		24
B 33.2
(3)
A 		16.2
(-3)
A 		21.1
(-1.3)
A 		16.5
(-2.9)
A 		17
C 30.4
(1.9)
A 		34.5
(3)
A 		12.2
(-3)
A 		26.3
(0.8)
A 		22
avr 31
(3) 		18.6
(-2.2) 		16.6
(-3) 		21.7
(-0.9) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 17.2
(-2.1)
A 		46.3
(0.8)
A 		7.7
(-3)
A 		13.2
(-2.5)
A 		67
(2.8)
A 		69.4
(3)
P 		62
B 27.8
(-1.6)
A 		46.2
(-0.4)
A 		6.5
(-3)
A 		28.9
(-1.5)
A 		70.6
(1.2)
A 		97
(3)
P 		91
C 9
(-3)
A 		35.9
(0.1)
A 		11.7
(-2.7)
A 		18.1
(-2)
A 		38.5
(0.4)
P 		61.2
(3)
P 		52
avr 18
(-2.2) 		42.8
(0) 		8.6
(-3) 		20.1
(-2) 		58.7
(1.5) 		75.9
(3) 		67
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181710_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3628
Sequence Type Exemplar sequence
Representative Public ID Y54E2A.8 NCBI
Target Description Y54E2A.8 /REP_DB=WormBase Gene ID /WP=CE20307 /TR=Q9XWI7 /GB=CAA21680.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064663(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064663 NCBI Caenorhabditis elegans Y54E2A.8 (Y54E2A.8) mRNA, complete cds. 11/11 None
GENEFINDER00000025440 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14778274:14782427:1 11/11 None
Y54E2A.8 ENSEMBL cdna:known chromosome:CEL140:II:14778256:14782525:1 gene:Y54E2A.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025434 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14778270-14782424(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y54E2A.8
Entrez Gene 190257 Entrez gene
SwissProt Q9XWI7 EMBL-EBI
WormBase CE20307 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21680 Hypothetical protein Y54E2A.8 [Caenorhabditis elegans] ref|NP_497064.1| Y54E2A.8 [Caenorhabditis elegans] 0.0
blast CAE60609 Hypothetical protein CBG04249 [Caenorhabditis briggsae] 6.0E-34
blast CAE60611 Hypothetical protein CBG04252 [Caenorhabditis briggsae] 6.0E-34
Sequence
Target Sequence 
>C. ELEGANS:181710_AT
ctcgaccggcggccaaatgacggagttttacaactggaaaccgaagattttgactggaaa
cctcgtcggaaacgacggaaggagctggaaaaagaacgagaagctgaggaggctgcggag
aaaagaaaaaaggaaaaagaacaattgccgagtttgaagttcaaatttggcaaggatgtt
gtcgatatgatacagaagaaagaactccctcttccgccgcacaaagctccagccactgac
gaaaatgctaataaattggaggcgattcctcccagcgcgacgaaacctggaaaactcacg
gagaacggcaaatatcgagataataaaggacggttgcagccacttttgaaaatgaatatt
caatttaaacgggttgacggtggaatgctcattcactgcgttcgaacaaccaagcacaac
ttggtaagaggcttgtggcagtctacagtatcaaaatgcatttctaaatcaggagttttc
tcaaaaacagaattcccacgaaaacccgaaaagttcaagcttccgccaccatcaccgatt
cccaaattacgactc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCGACCGGCGGCCAAATGACGGAG 654 231 880 Antisense
GATTTTGACTGGAAACCTCGTCGGA 321 429 925 Antisense
CAGAAGAAAGAACTCCCTCTTCCGC 135 205 1072 Antisense
ACAAAGCTCCAGCCACTGACGAAAA 397 111 1100 Antisense
AAATTGGAGGCGATTCCTCCCAGCG 176 115 1132 Antisense
CCTCCCAGCGCGACGAAACCTGGAA 313 265 1147 Antisense
AAAGGACGGTTGCAGCCACTTTTGA 286 119 1204 Antisense
GGGTTGACGGTGGAATGCTCATTCA 272 497 1250 Antisense
CATTCACTGCGTTCGAACAACCAAG 703 213 1269 Antisense
GAGGCTTGTGGCAGTCTACAGTATC 320 405 1307 Antisense
ATCACCGATTCCCAAATTACGACTC 536 25 1410 Antisense
Sequence Source Affymetrix Proprietary Database