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[181709_at]

Description C29F5.2 /REP_DB=WormBase Gene ID /WP=CE02509 /TR=Q18308 /GB=AAC46821.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 85      4grp_total > 19      6grp_cgc > 77      6grp_cgc_sub > 04_05_06      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 5.8
(-3)
A 		37.6
(0.5)
A 		32
(-0.1)
A 		59.7
(3)
A 		54
B 41.6
(3)
A 		33.1
(1.5)
A 		6.7
(-3)
A 		6.6
(-3)
A 		35
C 33.1
(-1.3)
A 		34.4
(-1.2)
A 		7.5
(-3)
A 		99.5
(3)
A 		92
avr 26.8
(-1.3) 		35
(-0.1) 		15.4
(-3) 		55.3
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 24.3
(-0.5)
A 		19.3
(-1.2)
A 		25
(-0.4)
A 		47.6
(3)
A 		38.4
(1.6)
A 		7.4
(-3)
A 		40
B 13.3
(-0.9)
A 		11
(-1.5)
A 		5
(-3)
A 		19.1
(0.6)
A 		21.1
(1.1)
A 		28.4
(3)
A 		23
C 6
(-2.6)
A 		36.6
(1.1)
A 		3.9
(-2.9)
A 		20.3
(-0.9)
A 		3.1
(-3)
A 		52
(3)
A 		49
avr 14.5
(-1.9) 		22.3
(0.7) 		11.3
(-3) 		29
(2.9) 		20.9
(0.2) 		29.3
(3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 2.1
(-3)
A 		8.2
(2.5)
A 		8.4
(2.7)
A 		8.7
(3)
A 		7
B 13.3
(3)
A 		8.2
(0.4)
A 		1.6
(-2.9)
A 		1.4
(-3)
A 		12
C 11
(0.5)
A 		9.9
(0.1)
A 		2.6
(-3)
A 		16.8
(3)
A 		14
avr 8.8
(2.8) 		8.8
(2.8) 		4.2
(-3) 		9
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 4.5
(-1.4)
A 		6.9
(-0)
A 		5.4
(-0.9)
A 		12.1
(3)
A 		11.6
(2.7)
A 		1.8
(-3)
A 		10
B 4.6
(-0.8)
A 		3.7
(-1.4)
A 		1.2
(-3)
A 		5
(-0.6)
A 		8.6
(1.7)
A 		10.6
(3)
A 		9
C 2.2
(-2.6)
A 		11.2
(0.7)
A 		1
(-3)
A 		4.1
(-1.9)
A 		1
(-3)
A 		17.4
(3)
A 		16
avr 3.8
(-1.9) 		7.3
(0.9) 		2.5
(-3) 		7.1
(0.7) 		7.1
(0.7) 		9.9
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181709_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4382
Sequence Type Exemplar sequence
Representative Public ID C29F5.2 NCBI
Target Description C29F5.2 /REP_DB=WormBase Gene ID /WP=CE02509 /TR=Q18308 /GB=AAC46821.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062864(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062864 NCBI Caenorhabditis elegans C29F5.2 (C29F5.2) mRNA, complete cds. 11/11 A 
SNAP00000032521 ENSEMBL cdna:SNAP chromosome:CEL140:II:6299450:6301346:1 11/11 None
GENEFINDER00000032527 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6299450:6301346:1 11/11 None
C29F5.2 ENSEMBL cdna:known chromosome:CEL140:II:6299475:6301346:1 gene:C29F5.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6299446-6301343(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sdz-3
Ensembl C29F5.2
Entrez Gene 183010 Entrez gene
SwissProt Q18308 EMBL-EBI
WormBase CE36105 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_495265 C29F5.2 [Caenorhabditis elegans] gb|AAC46821.2| Hypothetical protein C29F5.2 [Caenorhabditis elegans] 1.0E-133
blast NP_495265 C29F5.2 [Caenorhabditis elegans] gb|AAC46821.2| Hypothetical protein C29F5.2 [Caenorhabditis elegans] 1.0E-129
blast NP_495265 C29F5.2 [Caenorhabditis elegans] gb|AAC46821.2| Hypothetical protein C29F5.2 [Caenorhabditis elegans] 1.0E-113
blast AAC26936 Hypothetical protein F36H12.14 [Caenorhabditis elegans] ref|NP_500762.1| F36H12.14 [Caenorhabditis elegans] 7.0E-35
blast NP_495264 C29F5.5 [Caenorhabditis elegans] gb|AAC46824.1| Hypothetical protein C29F5.5 [Caenorhabditis elegans] 2.0E-30
blast AAC26936 Hypothetical protein F36H12.14 [Caenorhabditis elegans] ref|NP_500762.1| F36H12.14 [Caenorhabditis elegans] 9.0E-30
blast AAC26936 Hypothetical protein F36H12.14 [Caenorhabditis elegans] ref|NP_500762.1| F36H12.14 [Caenorhabditis elegans] 2.0E-28
Sequence
Target Sequence 
>C. ELEGANS:181709_AT
aaagagtcaaccgtcgtgattcgaccattgtggagccagaagccaagtcgcgaaagatgg
acgaaaattggacaggagttggaactgaatccgagtcgactgactgcgttgaaacgactg
aaactcgtttcacttggtttaaagctcagacaaaacatcccggtttagcgaaatccttgc
aatctgaagtgacgaaagttggactatcgatcgtggatctacagcattgcaccttgccat
gcaagagtataaattataacttccatttttattcgttcaaaggactcagcagagaggatt
cgaaaaaattcgaagagatgattgatcaaaatttcgtcaacaacttttgtgcagaaaatc
ttctcaacaaagaagataagaattttttttattatgatcttggatacaagcaggtggtct
ctctctcaatgctggccacgtacttcaaaatcaagaatgagcagccactattgcatcctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGAGTCAACCGTCGTGATTCGAC 337 123 329 Antisense
GTGATTCGACCATTGTGGAGCCAGA 194 485 344 Antisense
GAGCCAGAAGCCAAGTCGCGAAAGA 383 385 361 Antisense
GAATCCGAGTCGACTGACTGCGTTG 62 329 415 Antisense
AAAGCTCAGACAAAACATCCCGGTT 311 123 469 Antisense
TCCCGGTTTAGCGAAATCCTTGCAA 586 595 486 Antisense
AGTTGGACTATCGATCGTGGATCTA 122 65 525 Antisense
TGGATCTACAGCATTGCACCTTGCC 133 551 542 Antisense
TGGATACAAGCAGGTGGTCTCTCTC 329 551 729 Antisense
TGCTGGCCACGTACTTCAAAATCAA 451 583 758 Antisense
AATGAGCAGCCACTATTGCATCCTT 260 165 784 Antisense
Sequence Source Affymetrix Proprietary Database