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[181707_at]

Description F10D11.6 /REP_DB=WormBase Gene ID /WP=CE23640 /TR=O17781 /GB=CAB02917.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 90      6grp_highest_nonorm > 54      6grp_total > 82      4grp_total > 49      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2918
1 2 3 4 range
A 162.7
(-3)
M 		2663.9
(2.2)
P 		3070.3
(3)
P 		390.2
(-2.5)
P 		2908
B 152.5
(-3)
A 		2198.1
(2.6)
P 		2348.3
(3)
P 		365.7
(-2.4)
P 		2196
C 160.5
(-3)
A 		2393.2
(2.5)
P 		2576.8
(3)
P 		348.7
(-2.5)
P 		2416
avr 158.6
(-3) 		2418.4
(2.4) 		2665.1
(3) 		368.2
(-2.5) 		2507

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1709
1 2 3 4 5 6 range
A 477
(-3)
P 		1765.2
(1.8)
P 		1355.7
(0.3)
P 		1642.3
(1.4)
P 		2079.8
(3)
P 		1253.8
(-0.1)
P 		1603
B 370.8
(-3)
P 		1893.7
(3)
P 		1369.6
(0.9)
P 		1552
(1.7)
P 		1729.4
(2.4)
P 		1088.8
(-0.2)
P 		1523
C 434
(-3)
P 		1922.4
(3)
P 		1406.8
(0.9)
P 		1817
(2.6)
P 		1774
(2.4)
P 		1133.6
(-0.2)
P 		1488
avr 427.3
(-3) 		1860.4
(3) 		1377.4
(1) 		1670.4
(2.2) 		1861.1
(3) 		1158.7
(0.1) 		1434
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 850
1 2 3 4 range
A 59.2
(-3)
M 		578.3
(1.2)
P 		802.6
(3)
P 		57.1
(-3)
P 		746
B 48.6
(-3)
A 		542.9
(3)
P 		544.2
(3)
P 		77.9
(-2.6)
P 		496
C 53.1
(-3)
A 		688.1
(1.5)
P 		898.1
(3)
P 		58.8
(-3)
P 		845
avr 53.6
(-3) 		603.1
(1.7) 		748.3
(3) 		64.6
(-2.9) 		695

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 615
1 2 3 4 5 6 range
A 87.9
(-3)
P 		627.8
(3)
P 		295.2
(-0.7)
P 		416.5
(0.7)
P 		627.6
(3)
P 		305.3
(-0.6)
P 		540
B 129
(-3)
P 		630.3
(2.2)
P 		332.6
(-0.9)
P 		411.1
(-0)
P 		702.7
(3)
P 		406
(-0.1)
P 		574
C 160.9
(-3)
P 		586.6
(3)
P 		358.1
(-0.2)
P 		365.4
(-0.1)
P 		574
(2.8)
P 		379.5
(0.1)
P 		426
avr 125.9
(-3) 		614.9
(2.8) 		328.6
(-0.6) 		397.7
(0.2) 		634.8
(3) 		363.6
(-0.2) 		509
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181707_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2353
Sequence Type Exemplar sequence
Representative Public ID F10D11.6 NCBI
Target Description F10D11.6 /REP_DB=WormBase Gene ID /WP=CE23640 /TR=O17781 /GB=CAB02917.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059894(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059894 NCBI Caenorhabditis elegans F10D11.6 (F10D11.6) mRNA, complete cds. 11/11 None
SNAP00000043615 ENSEMBL cdna:SNAP chromosome:CEL140:I:8453878:8459119:-1 11/11 None
GENEFINDER00000043620 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8453878:8459119:-1 11/11 None
F10D11.6 ENSEMBL cdna:known chromosome:CEL140:I:8453574:8459119:-1 gene:F10D11.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8453577-8459050(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F10D11.6
Entrez Gene 172635 Entrez gene
SwissProt O17781 EMBL-EBI
WormBase CE23640 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8289 lipid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02917 Hypothetical protein F10D11.6 [Caenorhabditis elegans] ref|NP_492295.1| F10D11.6 [Caenorhabditis elegans] 0.0
blast CAE67125 Hypothetical protein CBG12545 [Caenorhabditis briggsae] 0.0
blast NP_500850 C55C3.1 [Caenorhabditis elegans] gb|AAA96173.1| Hypothetical protein C55C3.1 [Caenorhabditis elegans] 6.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR001124 EMBL-EBI Lipid-binding serum glycoprotein 5.1E-47
Sequence
Target Sequence 
>C. ELEGANS:181707_AT
tgccgacctcggaatctgttttggagatatccttccagctgtccgtgaaaaatatccaaa
ccagaaaattgccgttcaaatcagaactgttcgtgctccatctgtcattctttcttctgc
taaaggaggaatggttacactcgatttgattgctgatgctgatatctacattgatcagac
aaacacgaaagttggaacaatcacaattgctgccactgtagtgttgactgtccgaattgg
aggaggacgactctccggaactgctgaaattacacagcttcatctttccgatagaactgg
aacacttgggcttccacaagatgcactcgataatttgggaaatcttggaaaggaattgtt
gcagaaggttgctaatgatggactccaaaagggaatagccatttcaattccacaaaatct
accactcccaatcggaattatcaatccagatgttcatattgttgaacatggacttcacat
tgccacagactttacaatttccccatcactccttggagctggtgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCGACCTCGGAATCTGTTTTGGA 280 585 1929 Antisense
ATCCTTCCAGCTGTCCGTGAAAAAT 252 39 1957 Antisense
AATCAGAACTGTTCGTGCTCCATCT 480 171 2007 Antisense
GCCACTGTAGTGTTGACTGTCCGAA 628 279 2140 Antisense
GACTCTCCGGAACTGCTGAAATTAC 334 373 2177 Antisense
ACAGCTTCATCTTTCCGATAGAACT 395 109 2202 Antisense
GGCTTCCACAAGATGCACTCGATAA 570 537 2237 Antisense
AAATCTACCACTCCCAATCGGAATT 467 117 2343 Antisense
GAACATGGACTTCACATTGCCACAG 461 351 2392 Antisense
TGCCACAGACTTTACAATTTCCCCA 269 587 2409 Antisense
CCCCATCACTCCTTGGAGCTGGTGG 402 261 2429 Antisense
Sequence Source Affymetrix Proprietary Database