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[181706_at]

Description D1069.3 /REP_DB=WormBase Gene ID /WP=CE17615 /TR=O44790 /GB=AAB94945.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 60      4grp_highest_8_8 > 33      4grp_high_8_8 > 50      6grp_highest_nonorm > 71      6grp_total > 40      4grp_total > 61      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 206
1 2 3 4 range
A 315.8
(0.4)
P 		298.9
(-1.5)
P 		285.7
(-3)
P 		339
(3)
P 		53
B 353.4
(3)
P 		297.1
(1.4)
P 		295.2
(1.3)
P 		147.3
(-3)
P 		206
C 324
(3)
P 		310.9
(2.2)
P 		319.1
(2.7)
P 		222.7
(-3)
P 		101
avr 331.1
(3) 		302.3
(1.2) 		300
(1) 		236.3
(-3) 		95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 256
1 2 3 4 5 6 range
A 255.6
(-3)
P 		510.2
(3)
P 		262.5
(-2.8)
P 		436.3
(1.3)
P 		273.7
(-2.6)
P 		359.3
(-0.6)
P 		255
B 343.9
(3)
P 		335.3
(2.4)
P 		295.3
(-0.2)
P 		293
(-0.4)
P 		253.8
(-3)
P 		254.5
(-3)
P 		90
C 379.7
(-0.1)
P 		267.8
(-3)
P 		495.5
(3)
P 		433.4
(1.4)
P 		341.8
(-1.1)
P 		283.2
(-2.6)
P 		228
avr 326.4
(-0.8) 		371.1
(2) 		351.1
(0.8) 		387.6
(3) 		289.8
(-3) 		299
(-2.4) 		98
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 115
(3)
P 		64.9
(-1.6)
P 		74.7
(-0.7)
P 		49.6
(-3)
P 		65
B 112.7
(3)
P 		73.4
(0.1)
P 		68.4
(-0.3)
P 		31.4
(-3)
P 		81
C 107.2
(2.7)
P 		89.4
(1.2)
P 		111.2
(3)
P 		37.5
(-3)
P 		74
avr 111.6
(3) 		75.9
(0) 		84.8
(0.8) 		39.5
(-3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 134
1 2 3 4 5 6 range
A 47.1
(-3)
P 		181.4
(3)
P 		57.2
(-2.5)
P 		110.7
(-0.2)
P 		82.6
(-1.4)
P 		87.5
(-1.2)
P 		134
B 119.7
(3)
P 		111.6
(2)
P 		71.7
(-3)
P 		77.6
(-2.3)
P 		103.1
(0.9)
P 		94.9
(-0.1)
P 		48
C 140.8
(3)
P 		81.7
(-3)
P 		126.1
(1.5)
P 		87.1
(-2.5)
P 		110.6
(-0.1)
P 		94.8
(-1.7)
P 		59
avr 102.5
(-0.4) 		124.9
(3) 		85
(-3) 		91.8
(-2) 		98.8
(-0.9) 		92.4
(-1.9) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181706_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4429
Sequence Type Exemplar sequence
Representative Public ID D1069.3 NCBI
Target Description D1069.3 /REP_DB=WormBase Gene ID /WP=CE17615 /TR=O44790 /GB=AAB94945.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026879(11), NM_001026878(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026879 NCBI Caenorhabditis elegans D1069.3b (D1069.3) mRNA, complete cds. 11/11 None
NM_001026878 NCBI Caenorhabditis elegans D1069.3a (D1069.3) mRNA, complete cds. 11/11 None
GENEFINDER00000035341 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:343692:347773:-1 11/11 None
D1069.3b ENSEMBL cdna:known chromosome:CEL140:II:342136:347773:-1 gene:D1069.3 11/11 None
D1069.3a ENSEMBL cdna:known chromosome:CEL140:II:343692:347860:-1 gene:D1069.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000035337 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:343691-347773(-) 100.0 100.0
Public Domain and Genome References
Ensembl D1069.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001022050 D1069.3b [Caenorhabditis elegans] gb|AAT81205.1| Hypothetical protein D1069.3b [Caenorhabditis elegans] 0.0
blast NP_001022049 D1069.3a [Caenorhabditis elegans] gb|AAB94945.1| Hypothetical protein D1069.3a [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:181706_AT
aaaccacgtcagcaagtgtccggagagtttttgaatcatttgctacgtggatgctatttg
gcacttttcaatggagccgccgatttggctctgcaggcaattgatgctattcatttgaga
gcacaatatgaaatgcttcccgatacgcttttggtcgttaactccctccgtaactcactt
ttggacaacatgtggagcaaggagaaacgaggggaactcatgtggacacggccacagcat
aaggaccaaacaaagcgccgcgacatggttacgaacgcctcactgaaaatgaaacgaatg
cctgaagatattccagttttggaacgtcaaaaagaatccacgtcgtcacgattcaacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACCACGTCAGCAAGTGTCCGGAG 341 125 772 Antisense
ATTTGCTACGTGGATGCTATTTGGC 329 17 809 Antisense
GGCACTTTTCAATGGAGCCGCCGAT 103 535 831 Antisense
CCGATTTGGCTCTGCAGGCAATTGA 53 265 851 Antisense
TATGAAATGCTTCCCGATACGCTTT 378 657 898 Antisense
TCCCTCCGTAACTCACTTTTGGACA 486 595 934 Antisense
CGAGGGGAACTCATGTGGACACGGC 656 247 979 Antisense
TGGACACGGCCACAGCATAAGGACC 3 547 994 Antisense
CAAAGCGCCGCGACATGGTTACGAA 580 189 1022 Antisense
TGGTTACGAACGCCTCACTGAAAAT 425 551 1037 Antisense
AATCCACGTCGTCACGATTCAACGA 161 149 1106 Antisense
Sequence Source Affymetrix Proprietary Database