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[181705_at]

Description B0281.6 /REP_DB=WormBase Gene ID /WP=CE07717 /TR=O16613 /GB=AAB66085.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 63      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 16.5
(3)
A 		3.2
(-3)
A 		11
(0.5)
A 		9.4
(-0.2)
A 		13
B 16.7
(2.4)
A 		12.8
(0.6)
A 		17.9
(3)
A 		5.2
(-3)
A 		13
C 20.2
(2.4)
A 		16.7
(-0.1)
A 		21.1
(3)
A 		12.5
(-3)
A 		9
avr 17.8
(3) 		10.9
(-1.7) 		16.7
(2.3) 		9
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 78.4
(2)
A 		3.2
(-3)
A 		38.6
(-0.6)
A 		92.8
(3)
A 		14.9
(-2.2)
A 		14.8
(-2.2)
A 		90
B 56.3
(3)
A 		36.8
(0.5)
A 		40.3
(0.9)
A 		54.9
(2.8)
A 		47.7
(1.9)
A 		9.5
(-3)
A 		47
C 63.1
(3)
A 		54.3
(2)
A 		50
(1.6)
A 		48.6
(1.4)
A 		34.2
(-0.2)
A 		8.6
(-3)
A 		55
avr 65.9
(3) 		31.4
(-0.8) 		43
(0.5) 		65.4
(2.9) 		32.3
(-0.7) 		11
(-3) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 6
(3)
A 		0.7
(-3)
A 		2.9
(-0.5)
A 		1.4
(-2.2)
A 		5
B 5.3
(3)
A 		3.2
(0)
A 		4.1
(1.3)
A 		1.1
(-3)
A 		4
C 6.7
(2.3)
A 		4.8
(0.1)
A 		7.3
(3)
A 		2.1
(-3)
A 		5
avr 6
(3) 		2.9
(-1.1) 		4.8
(1.4) 		1.5
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 14.5
(0.6)
A 		1.1
(-3)
A 		8.4
(-1)
A 		23.5
(3)
A 		4.5
(-2.1)
A 		3.6
(-2.3)
A 		22
B 19.6
(3)
A 		12.2
(0.2)
A 		9.8
(-0.7)
A 		14.5
(1.1)
A 		19.4
(2.9)
A 		3.6
(-3)
A 		16
C 23.4
(3)
A 		16.6
(1)
A 		12.7
(-0.1)
A 		9.8
(-1)
A 		11.1
(-0.6)
A 		2.9
(-3)
A 		21
avr 19.2
(3) 		10
(-0.5) 		10.3
(-0.4) 		15.9
(1.7) 		11.7
(0.2) 		3.4
(-3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181705_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5477
Sequence Type Exemplar sequence
Representative Public ID B0281.6 NCBI
Target Description B0281.6 /REP_DB=WormBase Gene ID /WP=CE07717 /TR=O16613 /GB=AAB66085.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061830(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061830 NCBI Caenorhabditis elegans B0281.6 (B0281.6) mRNA, complete cds. 11/11 None
SNAP00000033215 ENSEMBL cdna:SNAP chromosome:CEL140:II:2301402:2302230:-1 11/11 None
GENEFINDER00000033220 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2301402:2302230:-1 11/11 None
B0281.6 ENSEMBL cdna:known chromosome:CEL140:II:2301402:2302230:-1 gene:B0281.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2301400-2302229(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0281.6
Entrez Gene 181900 Entrez gene
SwissProt O16613 EMBL-EBI
WormBase CE07717 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6813 potassium ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
8076 voltage-gated potassium channel complex inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5249 voltage-gated potassium channel activity inferred from electronic annotation QuickGO AmiGO
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB66085 Hypothetical protein B0281.6 [Caenorhabditis elegans] ref|NP_494231.1| B0281.6 [Caenorhabditis elegans] 1.0E-119
blast AAC68762 Hypothetical protein C40A11.7 [Caenorhabditis elegans] ref|NP_494199.1| C40A11.7 [Caenorhabditis elegans] 3.0E-49
blast AAB66084 Hypothetical protein B0281.5 [Caenorhabditis elegans] ref|NP_494230.1| B0281.5 [Caenorhabditis elegans] 1.0E-47
Protein Domains
Database ID Description E-Value
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 1.1E-42
Sequence
Target Sequence 
>C. ELEGANS:181705_AT
ggaactgtgttcgtgactttgaaatcaactttgactaaacatcatggaatcttcaaagcg
ttggtcaaaaccgaaatgcctgctgaagatggcgatagtttcttcatcgaccgctctccg
aagcattttgaaacggtgctgaattatataagatccggcgatgttgatcttccagactcc
gagaatgaactgaaagaactgaaaagggaggcggaatactattcgttagaaaagctggca
acgttgtgccaatcttcaatgccaaagattaaaagttacaaaacggctgatgaactgtta
aacatgattgcgaacaccaagaaggtggtcgttgttattcactacctcgcttataaaaat
cagctacacaccatccctcttggatttaaattttccgagtttgtagagagaaataaggat
aaagcggaagtgtttatttatgagataaaagacgaagaggagttgaaagataaaccgtac
gtagatgatcccaatcgtgtttggagtttttgtatcttcaactccgagtggtcagaaaat
tatccgctcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACTGTGTTCGTGACTTTGAAAT 660 529 52 Antisense
TTGGTCAAAACCGAAATGCCTGCTG 272 539 112 Antisense
TGGCGATAGTTTCTTCATCGACCGC 527 545 141 Antisense
GACCGCTCTCCGAAGCATTTTGAAA 29 383 160 Antisense
TGTTGATCTTCCAGACTCCGAGAAT 184 561 213 Antisense
ACGTTGTGCCAATCTTCAATGCCAA 228 95 292 Antisense
TGGTCGTTGTTATTCACTACCTCGC 280 553 377 Antisense
TACACACCATCCCTCTTGGATTTAA 339 641 416 Antisense
AACCGTACGTAGATGATCCCAATCG 155 147 524 Antisense
TTTGTATCTTCAACTCCGAGTGGTC 318 665 560 Antisense
GTGGTCAGAAAATTATCCGCTCAAA 431 489 579 Antisense
Sequence Source Affymetrix Proprietary Database