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[181704_at]

Description K09C6.3 /REP_DB=WormBase Gene ID /WP=CE11992 /TR=O16944 /GB=AAB70670.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 14      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 32.3
(3)
A 		16.1
(-3)
A 		19.8
(-1.6)
A 		26.7
(0.9)
A 		16
B 15.8
(3)
A 		7.9
(-0.9)
A 		3.5
(-3)
A 		14.3
(2.3)
A 		12
C 30.5
(-1.3)
A 		22.3
(-2.7)
A 		20.8
(-3)
A 		54.3
(3)
A 		34
avr 26.2
(1) 		15.4
(-2.8) 		14.7
(-3) 		31.8
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 93
(3)
A 		31.7
(-1.4)
A 		27.1
(-1.7)
A 		35
(-1.1)
A 		8.8
(-3)
A 		15.6
(-2.5)
A 		84
B 36.2
(3)
A 		25.6
(1)
A 		3.9
(-3)
A 		18.2
(-0.3)
A 		12
(-1.5)
A 		11.8
(-1.5)
A 		32
C 22.2
(-0.4)
A 		30
(0.9)
A 		42.4
(3)
A 		17.3
(-1.2)
A 		6.7
(-3)
A 		15.8
(-1.5)
A 		36
avr 50.5
(3) 		29.1
(-0.1) 		24.5
(-0.8) 		23.5
(-0.9) 		9.2
(-3) 		14.4
(-2.2) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 11.7
(3)
A 		3.5
(-3)
A 		5.2
(-1.8)
A 		3.9
(-2.7)
A 		8
B 5
(3)
A 		1.9
(-1.4)
A 		0.8
(-3)
A 		3.1
(0.3)
A 		4
C 10.1
(3)
A 		6.4
(-3)
A 		7.2
(-1.7)
A 		9.2
(1.5)
A 		4
avr 8.9
(3) 		3.9
(-3) 		4.4
(-2.4) 		5.4
(-1.2) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 17.1
(3)
A 		11.3
(0.6)
A 		5.9
(-1.7)
A 		8.9
(-0.4)
A 		2.7
(-3)
A 		3.8
(-2.5)
A 		14
B 12.6
(3)
A 		8.5
(0.9)
A 		0.9
(-3)
A 		4.8
(-1)
A 		4.9
(-0.9)
A 		4.4
(-1.2)
A 		12
C 8.2
(1.2)
A 		9.2
(1.9)
A 		10.8
(3)
A 		3.5
(-2.1)
A 		2.2
(-3)
A 		5.3
(-0.8)
A 		9
avr 12.6
(3) 		9.7
(1.1) 		5.9
(-1.3) 		5.7
(-1.5) 		3.3
(-3) 		4.5
(-2.2) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181704_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14879
Sequence Type Exemplar sequence
Representative Public ID K09C6.3 NCBI
Target Description K09C6.3 /REP_DB=WormBase Gene ID /WP=CE11992 /TR=O16944 /GB=AAB70670.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070941(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070941 NCBI Caenorhabditis elegans K09C6.3 (K09C6.3) mRNA, complete cds. 11/11 None
K09C6.3 ENSEMBL cdna:known chromosome:CEL140:V:852317:852997:1 gene:K09C6.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000012279 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:852316-852997(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K09C6.3
Entrez Gene 187200 Entrez gene
SwissProt O16944 EMBL-EBI
WormBase CE11992 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70670 Hypothetical protein K09C6.3 [Caenorhabditis elegans] ref|NP_503342.1| K09C6.3 [Caenorhabditis elegans] 2.0E-60
blast NP_501424 D2096.9 [Caenorhabditis elegans] gb|AAA81496.1| Hypothetical protein D2096.9 [Caenorhabditis elegans] 2.0E-13
blast CAE73740 Hypothetical protein CBG21268 [Caenorhabditis briggsae] 1.0E-10
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503342.1 1 7-24
K09C6.3 1 7-24
Sequence
Target Sequence 
>C. ELEGANS:181704_AT
tgaatttcaaatcatctggcgcctggcttctagtgctctttctcgggtttgtgtttactc
agccattgtttaaggttgagaggcagttgcttcgaaatccatacgaattcaaaatcatga
ataacggatctccatcgctgagtctcgtcggcaccaattctcgctttacagagcattact
tgaaacgagctcacaagaaaaaagagcctcggcgggtttttacaagaatgaaaggtatca
tgtcgacgacaaacttcatcgcttctacaataga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAATTTCAAATCATCTGGCGCCTG 204 577 14 Antisense
TTCTCGGGTTTGTGTTTACTCAGCC 478 681 53 Antisense
GTTTACTCAGCCATTGTTTAAGGTT 69 237 66 Antisense
GAGGCAGTTGCTTCGAAATCCATAC 72 405 93 Antisense
AATAACGGATCTCCATCGCTGAGTC 619 171 133 Antisense
GCACCAATTCTCGCTTTACAGAGCA 655 313 164 Antisense
AGCATTACTTGAAACGAGCTCACAA 154 79 185 Antisense
TCACAAGAAAAAAGAGCCTCGGCGG 220 627 204 Antisense
TGAAAGGTATCATGTCGACGACAAA 215 569 242 Antisense
GTCGACGACAAACTTCATCGCTTCT 184 475 255 Antisense
CAAACTTCATCGCTTCTACAATAGA 437 191 263 Antisense
Sequence Source Affymetrix Proprietary Database