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[181703_at]

Description F56C9.5 /REP_DB=WormBase Gene ID /WP=CE01324 /TR=Q20862 /GB=AAK18960.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 02      6grp_cgc > 79      6grp_cgc_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 13.3
(-2.2)
A 		3.2
(-3)
A 		7.3
(-2.7)
A 		79.5
(3)
A 		76
B 1
(-3)
A 		3.2
(-2.8)
A 		3.2
(-2.8)
A 		53.9
(3)
A 		53
C 1
(-3)
A 		3
(-2.7)
A 		4.1
(-2.5)
A 		35.6
(3)
A 		35
avr 5.1
(-2.8) 		3.1
(-3) 		4.9
(-2.8) 		56.3
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 2.6
(-2.7)
A 		9
(-1.2)
A 		1.1
(-3)
A 		5.1
(-2.1)
A 		18.8
(1)
A 		27.5
(3)
A 		26
B 1.8
(-3)
A 		38
(1.9)
A 		2.6
(-2.9)
A 		3.6
(-2.8)
A 		46.4
(3)
A 		27.5
(0.5)
A 		45
C 3
(-2.9)
A 		2.1
(-3)
A 		3.6
(-2.8)
A 		3.2
(-2.9)
A 		23.1
(-0.2)
A 		46.8
(3)
A 		45
avr 2.5
(-3) 		16.4
(-0.3) 		2.4
(-3) 		4
(-2.7) 		29.4
(2.1) 		33.9
(3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 4.8
(-0.7)
A 		0.7
(-3)
A 		1.9
(-2.3)
A 		11.6
(3)
A 		11
B 0.3
(-3)
A 		0.8
(-2.7)
A 		0.8
(-2.7)
A 		11.5
(3)
A 		11
C 0.3
(-3)
A 		0.9
(-2.4)
A 		1.4
(-1.8)
A 		6
(3)
A 		6
avr 1.8
(-2.3) 		0.8
(-3) 		1.4
(-2.6) 		9.7
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 0.5
(-2.7)
A 		3.2
(-0.2)
A 		0.2
(-3)
A 		1.3
(-2)
A 		5.7
(2.1)
A 		6.7
(3)
A 		7
B 0.6
(-3)
A 		12.7
(1)
A 		0.6
(-3)
A 		1
(-2.9)
A 		18.8
(3)
A 		10.3
(0.2)
A 		18
C 1.1
(-2.8)
A 		0.7
(-3)
A 		0.9
(-2.9)
A 		0.6
(-3)
A 		7.5
(-0.3)
A 		15.7
(3)
A 		15
avr 0.7
(-2.9) 		5.5
(-0.1) 		0.6
(-3) 		1
(-2.8) 		10.7
(2.9) 		10.9
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181703_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7042
Sequence Type Exemplar sequence
Representative Public ID F56C9.5 NCBI
Target Description F56C9.5 /REP_DB=WormBase Gene ID /WP=CE01324 /TR=Q20862 /GB=AAK18960.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066208(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066208 NCBI Caenorhabditis elegans Acyl-Coenzyme A Binding Protein family member (acbp-4) (acbp-4) mRNA, complete cds. 11/11 None
GENEFINDER00000032869 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7308276:7308812:-1 11/11 None
F56C9.5 ENSEMBL cdna:known chromosome:CEL140:III:7308276:7308812:-1 gene:F56C9.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000032849 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7308273-7308810(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol acbp-4
Ensembl F56C9.5
Entrez Gene 186372 Entrez gene
SwissProt Q20862 EMBL-EBI
WormBase CE01324 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
62 acyl-CoA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK18960 Acyl-coenzyme a binding protein protein 4 [Caenorhabditis elegans] ref|NP_498609.1| Acyl-Coenzyme A Binding Protein family member (acbp-4) [Caenorhabditis elegans] 1.0E-80
blast CAE57625 Hypothetical protein CBG00608 [Caenorhabditis briggsae] emb|CAE69296.1| Hypothetical protein CBG15351 [Caenorhabditis briggsae] 4.0E-60
blast CAB07319 Hypothetical protein C18D11.2 [Caenorhabditis elegans] ref|NP_499531.1| Membrane Associated Acyl-CoA binding protein family member (maa-1) [Caenorhabditis elegans] 2.0E-21
Protein Domains
Database ID Description E-Value
Pfam IPR000582 EMBL-EBI Acyl-coA-binding protein, ACBP 3.5E-52
Sequence
Target Sequence 
>C. ELEGANS:181703_AT
caattcgaggcagcagtgtggattattaatgcattgcctaaaaatggaccaattaaaact
agtatcaatgatcagctgcaaatgtatagcctctataaacaggcaacatcagggaaatgt
gatacaattcaaccatatttctttcaaattgagcagcgaatgaaatggaatgcatggaat
caattgggaaatatggatgaagcagaagcaaaagctcaatatgttgaaaaaatgcttaaa
ttgtgcaatcaagctgaggctgaacacaatctgatggaatttctgtcggatccaacgatc
gctgatcttcttccaaagcagaatcaactccgtgagcacttcgccacattgggccgtaca
aca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATTCGAGGCAGCAGTGTGGATTA 217 179 34 Antisense
GTGGATTATTAATGCATTGCCTAAA 629 489 51 Antisense
GATCAGCTGCAAATGTATAGCCTCT 39 421 103 Antisense
TACAATTCAACCATATTTCTTTCAA 405 641 156 Antisense
AATTGTGCAATCAAGCTGAGGCTGA 608 177 272 Antisense
GCTGAGGCTGAACACAATCTGATGG 191 297 286 Antisense
ATCTGATGGAATTTCTGTCGGATCC 588 33 302 Antisense
GTCGGATCCAACGATCGCTGATCTT 151 473 318 Antisense
GATCTTCTTCCAAAGCAGAATCAAC 147 421 337 Antisense
AGAATCAACTCCGTGAGCACTTCGC 209 75 353 Antisense
CTTCGCCACATTGGGCCGTACAACA 274 219 372 Antisense
Sequence Source Affymetrix Proprietary Database