[Home] | [Total List]

[181701_at]

Description F08F1.5 /REP_DB=WormBase Gene ID /WP=CE09252 /TR=O17386 /GB=AAB71305.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 56      4grp_total > 11      6grp_cgc > 37      6grp_cgc_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 76.9
(-1.9)
A 		70.3
(-2.3)
A 		58.8
(-3)
A 		155.3
(3)
P 		97
B 43.4
(-1.7)
A 		42.1
(-2)
A 		37.2
(-3)
A 		66.3
(3)
A 		29
C 71.9
(-1.4)
A 		69.2
(-1.7)
A 		58.5
(-3)
A 		107.3
(3)
P 		49
avr 64.1
(-1.7) 		60.5
(-2.1) 		51.5
(-3) 		109.6
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 86.7
(3)
A 		62.2
(-1.5)
A 		62
(-1.6)
A 		73.5
(0.6)
A 		54.2
(-3)
A 		62.4
(-1.5)
A 		33
B 34.5
(-2.3)
A 		68.8
(0.2)
A 		28
(-2.7)
A 		37.4
(-2.1)
A 		24.4
(-3)
A 		108
(3)
P 		84
C 19
(-2.6)
A 		52.3
(0.7)
A 		57.8
(1.2)
A 		58.2
(1.3)
A 		14.6
(-3)
A 		75.8
(3)
P 		61
avr 46.7
(-1.2) 		61.1
(0.5) 		49.3
(-0.9) 		56.4
(-0) 		31.1
(-3) 		82.1
(3) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 28
(3)
A 		15.3
(-3)
A 		15.4
(-3)
A 		22.7
(0.5)
P 		13
B 13.8
(2.7)
A 		10.4
(-1)
A 		8.6
(-3)
A 		14.1
(3)
A 		6
C 23.8
(3)
A 		19.9
(-1.1)
A 		20.4
(-0.6)
A 		18.1
(-3)
P 		6
avr 21.9
(3) 		15.2
(-2.7) 		14.8
(-3) 		18.3
(-0) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 16
(-1.3)
A 		22.1
(3)
A 		13.5
(-3)
A 		18.6
(0.6)
A 		16.3
(-1)
A 		15.2
(-1.8)
A 		9
B 12
(-2.1)
A 		22.9
(-0.1)
A 		6.8
(-3)
A 		9.9
(-2.4)
A 		9.9
(-2.4)
A 		40.3
(3)
P 		34
C 7.1
(-2.3)
A 		15.9
(0.2)
A 		14.7
(-0.1)
A 		11.7
(-1)
A 		4.7
(-3)
A 		25.4
(3)
P 		21
avr 11.7
(-2.5) 		20.3
(0.6) 		11.7
(-2.5) 		13.4
(-1.9) 		10.3
(-3) 		27
(3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181701_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16289
Sequence Type Exemplar sequence
Representative Public ID F08F1.5 NCBI
Target Description F08F1.5 /REP_DB=WormBase Gene ID /WP=CE09252 /TR=O17386 /GB=AAB71305.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077026(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077026 NCBI Caenorhabditis elegans CEll Death abnormality family member (ced-8) (ced-8) mRNA, complete cds. 11/11 None
SNAP00000012385 ENSEMBL cdna:SNAP chromosome:CEL140:X:8414037:8415383:-1 10/11 None
GENEFINDER00000012394 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8414037:8416746:-1 11/11 None
F08F1.5 ENSEMBL cdna:known chromosome:CEL140:X:8414037:8416746:-1 gene:F08F1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8414035-8416745(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ced-8
Ensembl F08F1.5
Entrez Gene 184190 Entrez gene
SwissProt O17386 EMBL-EBI
WormBase CE34294 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1592788_AT similar to XK-related protein 9 cfa
CANINE_2:CFA.5879.1.A1_AT similar to XK-related protein 9 cfa
HG-U95E:71286_R_AT X Kell blood group precursor-related family, member 9 hs
MU19KSUBC:TC41279_AT X Kell blood group precursor related family member 9 homolog (Xkr9), mRNA mm
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5886 plasma membrane inferred from direct assay QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB71305 Cell death abnormality protein 8 [Caenorhabditis elegans] ref|NP_509427.2| CEll Death abnormality family member (ced-8) [Caenorhabditis elegans] 0.0
blast CAE74895 Hypothetical protein CBG22761 [Caenorhabditis briggsae] 0.0
blast AAT07397 XK-related [Caenorhabditis briggsae] 1.0E-179
blast AAB71305 Cell death abnormality protein 8 [Caenorhabditis elegans] ref|NP_509427.2| CEll Death abnormality family member (ced-8) [Caenorhabditis elegans] 1.0E-117
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509427.2 8 35-57,77-99,131-153,218-240,275-306,321-338,345-367,377-399
F08F1.5 8 35-57,77-99,131-153,218-240,275-306,321-338,345-367,377-399
SNAP00000012385 4 29-60,75-92,99-121,131-153
GENEFINDER00000012394 8 35-57,77-99,131-153,218-240,275-306,321-338,345-367,377-399
Sequence
Target Sequence 
>C. ELEGANS:181701_AT
tggtccgtcgttgttcaaaaccgctcgttacgaatgattagggatgacaaagtcaatatt
tggccacacgaagcggttttgcagttctgttggagattcctcacgattttagcgaggatt
atcacacttgtcgcattggtgctgatatttggtatcaatgtggcaatccacatagatgcg
tgtactcatattgagaagctgctccttcttatcaatactttcatccatatttttataccg
ttcaatatggtggaaggaaacacacggtggcgatatttaacagcctattctgttgagttt
attgagatgatgttagtctgctggcttcttccattgtcattaaatacatttccgtatatt
gaaaaagttcaagttggcgttccaatttcatttatagctggtattgcaatcatgatgatg
tattatcagtttttccatcccaacagacggcagctaattgttacgcaatcacaagaagat
cttagtctgaatgtgcagaaatccgttgagacgctcacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGTCCGTCGTTGTTCAAAACCGCT 43 503 718 Antisense
TTGGCCACACGAAGCGGTTTTGCAG 435 707 777 Antisense
GCAGTTCTGTTGGAGATTCCTCACG 159 313 798 Antisense
ATCACACTTGTCGCATTGGTGCTGA 607 27 838 Antisense
GAAGCTGCTCCTTCTTATCAATACT 297 343 912 Antisense
ATGATGTTAGTCTGCTGGCTTCTTC 693 45 1024 Antisense
GGCTTCTTCCATTGTCATTAAATAC 605 537 1040 Antisense
GGCGTTCCAATTTCATTTATAGCTG 585 541 1093 Antisense
TGTATTATCAGTTTTTCCATCCCAA 259 561 1136 Antisense
AGACGGCAGCTAATTGTTACGCAAT 451 71 1162 Antisense
GCAGAAATCCGTTGAGACGCTCACC 500 311 1212 Antisense
Sequence Source Affymetrix Proprietary Database