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[181698_s_at]

Description C08F1.5 /REP_DB=WormBase Gene ID /WP=CE08020 /TR=O17176 /GB=AAK31404.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 32      6grp_high1_10_10 > 13      4grp_highest_8_8 > 43      4grp_high_8_8 > 40      6grp_highest_nonorm > 70      6grp_total > 23      4grp_total > 55      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 259
1 2 3 4 range
A 436.4
(3)
P 		245.2
(-1.9)
P 		275.4
(-1.1)
P 		202.9
(-3)
P 		234
B 375.6
(3)
P 		241.6
(-1.8)
P 		211.6
(-2.9)
P 		208.3
(-3)
P 		167
C 410.6
(3)
P 		177.1
(-3)
P 		284.4
(-0.2)
P 		218
(-1.9)
P 		234
avr 407.5
(3) 		221.3
(-2.6) 		257.1
(-1.6) 		209.7
(-3) 		198

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 270
1 2 3 4 5 6 range
A 322.2
(3)
P 		296.1
(2.3)
P 		276.4
(1.9)
P 		283
(2)
P 		124.9
(-1.9)
P 		82.7
(-3)
P 		240
B 348.5
(2.9)
P 		352.8
(3)
P 		250
(0.3)
P 		265.6
(0.7)
P 		148.7
(-2.4)
P 		128
(-3)
P 		225
C 299.8
(1.8)
P 		350.6
(3)
P 		280.1
(1.3)
P 		219.5
(-0.2)
P 		106.4
(-3)
P 		133.6
(-2.3)
P 		244
avr 323.5
(2.7) 		333.2
(3) 		268.8
(1.2) 		256
(0.9) 		126.7
(-2.7) 		114.8
(-3) 		218
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 158.9
(3)
P 		53.2
(-1.9)
P 		72
(-1)
P 		29.7
(-3)
P 		129
B 119.8
(3)
P 		59.7
(-1.8)
P 		49
(-2.6)
P 		44.4
(-3)
P 		75
C 135.9
(3)
P 		50.9
(-2.1)
P 		99.1
(0.8)
P 		36.8
(-3)
P 		99
avr 138.2
(3) 		54.6
(-2) 		73.4
(-0.8) 		37
(-3) 		101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 59.4
(-0.2)
P 		105.3
(3)
P 		60.2
(-0.2)
P 		71.8
(0.6)
P 		37.7
(-1.8)
P 		20.1
(-3)
P 		85
B 121.3
(3)
P 		117.4
(2.7)
P 		60.7
(-1.9)
P 		70.3
(-1.2)
P 		60.4
(-2)
P 		47.7
(-3)
P 		74
C 111.1
(3)
P 		107
(2.7)
P 		71.3
(-0.1)
P 		44.2
(-2.2)
P 		34.4
(-3)
P 		44.7
(-2.2)
P 		77
avr 97.3
(2) 		109.9
(3) 		64.1
(-0.8) 		62.1
(-1) 		44.2
(-2.4) 		37.5
(-3) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181698_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5045
Sequence Type Exemplar sequence
Representative Public ID C08F1.5 NCBI
Target Description C08F1.5 /REP_DB=WormBase Gene ID /WP=CE08020 /TR=O17176 /GB=AAK31404.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061676(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061676 NCBI Caenorhabditis elegans C08F1.5 (C08F1.5) mRNA, complete cds. 11/11 None
SNAP00000012040 ENSEMBL cdna:SNAP chromosome:CEL140:II:1778904:1781810:-1 11/11 None
GENEFINDER00000012054 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1778904:1782310:-1 11/11 None
C08F1.5 ENSEMBL cdna:known chromosome:CEL140:II:1778775:1782310:-1 gene:C08F1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1778902-1786009(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C08F1.5
Entrez Gene 173548 Entrez gene
WormBase CE31772 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494077 C08F1.5 [Caenorhabditis elegans] 0.0
blast T32338 hypothetical protein C08F1.5 - Caenorhabditis elegans 0.0
blast AAM98053 Hypothetical protein C08F1.5 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 2.4E-11
Pfam IPR002083 EMBL-EBI MATH 1.4E-39
Pfam IPR002083 EMBL-EBI MATH 1.3E-12
Pfam IPR002083 EMBL-EBI MATH 1.3E-25
Pfam IPR002083 EMBL-EBI MATH 6.5E-31
Pfam IPR002083 EMBL-EBI MATH 2.1E-11
Pfam IPR002083 EMBL-EBI MATH 2.4E-11
Pfam IPR002083 EMBL-EBI MATH 1.4E-39
Pfam IPR002083 EMBL-EBI MATH 1.7E-22
Pfam IPR002083 EMBL-EBI MATH 1.6E-30
Pfam IPR002083 EMBL-EBI MATH 6.5E-31
Pfam IPR002083 EMBL-EBI MATH 1.4E-39
Pfam IPR002083 EMBL-EBI MATH 1.7E-22
Pfam IPR002083 EMBL-EBI MATH 1.3E-25
Pfam IPR002083 EMBL-EBI MATH 6.5E-31
Sequence
Target Sequence 
>C. ELEGANS:181698_S_AT
ggtgtatccaagcgaagtttcaactcatgcttgttggtgcagatgataaaatcctcactg
acttttgcgagcacaattttgaaaatgccgagtcggctggggattcgaaagtcatcagat
gggaggatatgttgagtcagtatgtggtggatgacagtgtgacatttaaagcgcgcgtgg
tgttcactcatattactgatttgcttccctcatactcattcacgatgttactcactctca
aagatattcctaatgttcaagaaggagaatcctattttagtaacacagaaaagcattgtg
atgctccatggagaatttccgctacaaaagaacaatcgtgcattttaatatatctccatt
gcgacaagaggttatgtaacgatgagcactggtcgattaaagtcgaggctcaactagtct
tggtgtcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGTATCCAAGCGAAGTTTCAACT 699 497 3518 Antisense
GTTTCAACTCATGCTTGTTGGTGCA 503 449 3534 Antisense
AATCCTCACTGACTTTTGCGAGCAC 589 167 3567 Antisense
TGCCGAGTCGGCTGGGGATTCGAAA 682 583 3603 Antisense
GTGTGACATTTAAAGCGCGCGTGGT 48 489 3674 Antisense
GCGCGTGGTGTTCACTCATATTACT 510 287 3690 Antisense
ATATTACTGATTTGCTTCCCTCATA 546 19 3707 Antisense
TTCCCTCATACTCATTCACGATGTT 123 699 3722 Antisense
TCACGATGTTACTCACTCTCAAAGA 162 627 3737 Antisense
GGTTATGTAACGATGAGCACTGGTC 331 505 3887 Antisense
GAGGCTCAACTAGTCTTGGTGTCAG 603 405 3922 Antisense
Sequence Source Affymetrix Proprietary Database