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[181697_at]

Description C08E3.6 /REP_DB=WormBase Gene ID /WP=CE08009 /TR=O17196 /GB=AAB70966.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 02      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1278
1 2 3 4 range
A 7.4
(-3)
A 		11.3
(-2.9)
A 		0.9
(-3)
A 		969.9
(3)
P 		969
B 2.8
(-3)
A 		9.5
(-3)
A 		1.2
(-3)
A 		1257.5
(3)
P 		1256
C 2.9
(-3)
A 		18.7
(-2.9)
A 		12.5
(-3)
A 		1278.6
(3)
P 		1276
avr 4.4
(-3) 		13.2
(-3) 		4.9
(-3) 		1168.7
(3) 		1164

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 276
1 2 3 4 5 6 range
A 21.4
(-2.7)
A 		9.7
(-3)
A 		61.9
(-1.7)
P 		243.9
(3)
P 		122.7
(-0.1)
P 		59.1
(-1.7)
P 		234
B 14.4
(-3)
A 		24.3
(-2.7)
A 		57.5
(-1.9)
P 		249.5
(3)
P 		146.4
(0.4)
P 		47.5
(-2.2)
P 		235
C 22.1
(-3)
A 		41.4
(-2.6)
A 		74.7
(-1.8)
P 		286.1
(3)
P 		130.5
(-0.5)
P 		53.9
(-2.3)
P 		264
avr 19.3
(-3) 		25.1
(-2.9) 		64.7
(-1.9) 		259.8
(3) 		133.2
(-0.2) 		53.5
(-2.1) 		241
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 268
1 2 3 4 range
A 2.7
(-2.9)
A 		2.5
(-2.9)
A 		0.2
(-3)
A 		142
(3)
P 		142
B 0.9
(-3)
A 		2.3
(-3)
A 		0.3
(-3)
A 		268
(3)
P 		268
C 1
(-3)
A 		5.4
(-2.9)
A 		4.4
(-2.9)
A 		215.6
(3)
P 		215
avr 1.5
(-3) 		3.4
(-2.9) 		1.6
(-3) 		208.5
(3) 		207

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 3.9
(-2.9)
A 		3.4
(-3)
A 		13.5
(-2)
P 		61.9
(3)
P 		37
(0.4)
P 		14.4
(-1.9)
P 		59
B 5
(-3)
A 		8.1
(-2.7)
A 		14
(-2.1)
P 		66.1
(3)
P 		59.5
(2.4)
P 		17.7
(-1.8)
P 		61
C 8.2
(-3)
A 		12.6
(-2.5)
A 		19
(-1.7)
P 		57.5
(3)
P 		42.2
(1.1)
P 		18
(-1.8)
P 		49
avr 5.7
(-3) 		8
(-2.8) 		15.5
(-2) 		61.8
(3) 		46.2
(1.3) 		16.7
(-1.8) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181697_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4493
Sequence Type Exemplar sequence
Representative Public ID C08E3.6 NCBI
Target Description C08E3.6 /REP_DB=WormBase Gene ID /WP=CE08009 /TR=O17196 /GB=AAB70966.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061609(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061609 NCBI Caenorhabditis elegans C08E3.6 (C08E3.6) mRNA, complete cds. 11/11 None
SNAP00000042046 ENSEMBL cdna:SNAP chromosome:CEL140:II:1609320:1610719:-1 11/11 None
GENEFINDER00000042061 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1609320:1610719:-1 11/11 None
C08E3.6 ENSEMBL cdna:known chromosome:CEL140:II:1609320:1610719:-1 gene:C08E3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1609318-1610718(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C08E3.6
Entrez Gene 182398 Entrez gene
SwissProt O17196 EMBL-EBI
WormBase CE08009 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70966 Hypothetical protein C08E3.6 [Caenorhabditis elegans] ref|NP_494010.1| C08E3.6 [Caenorhabditis elegans] 0.0
blast AAB70969 Hypothetical protein C08E3.10 [Caenorhabditis elegans] ref|NP_494015.2| C08E3.10 [Caenorhabditis elegans] 1.0E-101
blast AAB70968 Hypothetical protein C08E3.9 [Caenorhabditis elegans] 1.0E-93
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.0E-50
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 6.7E-12
Sequence
Target Sequence 
>C. ELEGANS:181697_AT
aaatcccgcaaaaagttcatagccggtatcgaaaaagctctcaattcggcgaaaaacttg
tcgtcaaaaactgtgcaaacccaattcgtttcatatccagaacttgcccaactgttgccc
attttccctgcggaaaaactgaaaaaacttatactgaatggattggacggtcgagaatat
gaacagctgattgatctggatcaatggaaaaaggcgagaatatttcaaggatttgagggg
gagttaaatgttccgattgagcacttcttgcatttcgagtggctcgatgttcatctcgca
acattcacagatgaagatgcaatgaagcttcgtgatatgatcgacagatcagctcacttc
gtttatgctgaaattcaatacacacgtatgaacatcgatagactaaagagagtcttcgat
gtgcacagtgtggagcacaatcacatttacgaaactccggacaaaagatctttctatgtt
gcatttggtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCCCGCAAAAAGTTCATAGCCG 461 117 622 Antisense
GCCGGTATCGAAAAAGCTCTCAATT 255 283 643 Antisense
CAATTCGGCGAAAAACTTGTCGTCA 626 177 663 Antisense
GGACGGTCGAGAATATGAACAGCTG 89 523 786 Antisense
CGAGTGGCTCGATGTTCATCTCGCA 125 251 897 Antisense
GATCGACAGATCAGCTCACTTCGTT 566 417 960 Antisense
GCTCACTTCGTTTATGCTGAAATTC 132 301 973 Antisense
AGAGAGTCTTCGATGTGCACAGTGT 349 69 1028 Antisense
GCACAGTGTGGAGCACAATCACATT 95 317 1044 Antisense
ATCACATTTACGAAACTCCGGACAA 335 21 1061 Antisense
GATCTTTCTATGTTGCATTTGGTCA 262 419 1088 Antisense
Sequence Source Affymetrix Proprietary Database