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[181695_at]

Description C49G7.7 /REP_DB=WormBase Gene ID /WP=CE08865 /TR=O16221 /GB=AAK18901.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 13      6grp_total > 13      4grp_total > 39      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 353
1 2 3 4 range
A 382.7
(3)
P 		79.4
(-3)
A 		83.5
(-2.9)
A 		198.1
(-0.7)
P 		303
B 422.8
(3)
P 		82.6
(-3)
A 		109.8
(-2.5)
P 		133.5
(-2.1)
P 		340
C 308.5
(3)
P 		92.8
(-2.4)
A 		70
(-3)
A 		198.3
(0.2)
P 		239
avr 371.3
(3) 		84.9
(-3) 		87.8
(-2.9) 		176.6
(-1.1) 		286

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 293
1 2 3 4 5 6 range
A 251.3
(3)
M 		229.2
(2.2)
P 		225.8
(2.1)
P 		160.6
(-0.3)
A 		110.5
(-2.1)
P 		86.5
(-3)
A 		165
B 250.5
(1.6)
P 		312.5
(3)
P 		194.3
(0.2)
P 		200.2
(0.4)
P 		98.9
(-2)
P 		54.7
(-3)
P 		258
C 294.7
(1.9)
P 		347.3
(3)
P 		117.5
(-1.7)
A 		187.6
(-0.3)
P 		78.3
(-2.5)
P 		55.9
(-3)
A 		291
avr 265.5
(2.2) 		296.3
(3) 		179.2
(-0) 		182.8
(0) 		95.9
(-2.2) 		65.7
(-3) 		231
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 139.3
(3)
P 		17.2
(-3)
A 		21.8
(-2.8)
A 		29
(-2.4)
P 		122
B 134.8
(3)
P 		20.4
(-3)
A 		25.4
(-2.7)
P 		28.5
(-2.6)
P 		114
C 102.1
(3)
P 		26.7
(-2.8)
A 		24.4
(-3)
A 		33.4
(-2.3)
P 		78
avr 125.4
(3) 		21.4
(-3) 		23.9
(-2.9) 		30.3
(-2.5) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 46.3
(-0.5)
M 		81.5
(3)
P 		49.2
(-0.2)
P 		40.7
(-1.1)
A 		33.3
(-1.8)
P 		21.1
(-3)
A 		60
B 87.2
(1.8)
P 		104
(3)
P 		47.2
(-1.1)
P 		53
(-0.7)
P 		40.2
(-1.6)
P 		20.4
(-3)
P 		84
C 109.2
(3)
P 		106
(2.8)
P 		29.9
(-2.3)
A 		37.7
(-1.7)
P 		25.3
(-2.6)
P 		18.7
(-3)
A 		91
avr 80.9
(1.7) 		97.2
(3) 		42.1
(-1.3) 		43.8
(-1.2) 		32.9
(-2) 		20.1
(-3) 		77
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181695_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15648
Sequence Type Exemplar sequence
Representative Public ID C49G7.7 NCBI
Target Description C49G7.7 /REP_DB=WormBase Gene ID /WP=CE08865 /TR=O16221 /GB=AAK18901.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071724(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071724 NCBI Caenorhabditis elegans C49G7.7 (C49G7.7) mRNA, complete cds. 11/11 None
SNAP00000008204 ENSEMBL cdna:SNAP chromosome:CEL140:V:4038998:4039662:1 11/11 None
GENEFINDER00000008218 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4038641:4039682:1 11/11 None
C49G7.7 ENSEMBL cdna:known chromosome:CEL140:V:4034372:4039662:1 gene:C49G7.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4034371-4039662(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C49G7.7
Entrez Gene 183621 Entrez gene
SwissProt O16221 EMBL-EBI
WormBase CE08865 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18901 Hypothetical protein C49G7.7 [Caenorhabditis elegans] ref|NP_504125.1| C49G7.7 [Caenorhabditis elegans] 0.0
blast AAK18901 Hypothetical protein C49G7.7 [Caenorhabditis elegans] ref|NP_504125.1| C49G7.7 [Caenorhabditis elegans] 1.0E-131
blast CAB05221 Hypothetical protein F55G11.7 [Caenorhabditis elegans] ref|NP_502480.1| F55G11.7 [Caenorhabditis elegans] 1.0E-117
blast CAB05215 Hypothetical protein F55G11.6 [Caenorhabditis elegans] ref|NP_502479.1| F55G11.6 [Caenorhabditis elegans] 1.0E-116
blast AAK18901 Hypothetical protein C49G7.7 [Caenorhabditis elegans] ref|NP_504125.1| C49G7.7 [Caenorhabditis elegans] 4.0E-95
blast CAE58291 Hypothetical protein CBG01398 [Caenorhabditis briggsae] 7.0E-44
blast AAK18900 Hypothetical protein C49G7.5 [Caenorhabditis elegans] ref|NP_504128.1| C49G7.5 [Caenorhabditis elegans] 2.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 1.2E-50
Sequence
Target Sequence 
>C. ELEGANS:181695_AT
actcgtattcgatcgtgttctgctatattacgatcctttttggtatttattctaccatac
tttctattatcatgatttccttctcaagttcccgattcgtcaattttatcataaacattc
aaataaaaattatcagtacacttctggaaattcaacatttggacaatcctacaaaagttt
acttcctgagagccgatctccccgaatacctgaagctagcaagaaattagaaagtggtct
gtctccaaaagttgcctatcacattattactccgccgaaaaattatgaaaaattacgaaa
taatgatttcaatccagtatctagttttcgaaaaggccatcgagtaatatcacattggcg
acgtacggatgaaatgctggatatatggttcgcccttcgatatgaagagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTCGTATTCGATCGTGTTCTGCTA 11 101 2142 Antisense
GTTCTGCTATATTACGATCCTTTTT 315 443 2158 Antisense
ATTCTACCATACTTTCTATTATCAT 392 11 2190 Antisense
CTATTATCATGATTTCCTTCTCAAG 710 223 2205 Antisense
CTTCTCAAGTTCCCGATTCGTCAAT 433 219 2221 Antisense
AAGTTTACTTCCTGAGAGCCGATCT 496 155 2316 Antisense
CTCCCCGAATACCTGAAGCTAGCAA 191 235 2339 Antisense
TGCCTATCACATTATTACTCCGCCG 401 585 2394 Antisense
TAATATCACATTGGCGACGTACGGA 212 635 2486 Antisense
AATGCTGGATATATGGTTCGCCCTT 129 167 2514 Antisense
GGTTCGCCCTTCGATATGAAGAGCT 403 507 2528 Antisense
Sequence Source Affymetrix Proprietary Database