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[181693_at]

Description D2062.5 /REP_DB=WormBase Gene ID /WP=CE09092 /TR=O16597 /GB=AAB66063.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 42      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 0.5
(-3)
A 		2.6
(3)
A 		1.2
(-1)
A 		1.5
(-0.1)
A 		2
B 0.6
(-3)
A 		2.8
(3)
A 		0.7
(-2.7)
A 		1.2
(-1.4)
A 		2
C 0.7
(-3)
A 		4.1
(2.4)
A 		4.5
(3)
A 		2.7
(0.2)
A 		4
avr 0.6
(-3) 		3.2
(3) 		2.1
(0.5) 		1.8
(-0.2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 2.1
(-2.5)
A 		8.6
(0.4)
A 		1
(-3)
A 		11.4
(1.6)
A 		1.8
(-2.6)
A 		14.5
(3)
A 		14
B 2.3
(-2)
A 		12.5
(3)
A 		1.1
(-2.6)
A 		9.2
(1.4)
A 		0.9
(-2.7)
A 		0.3
(-3)
A 		12
C 1.7
(-2.8)
A 		13.2
(3)
A 		3
(-2.1)
A 		1.3
(-3)
A 		2.3
(-2.5)
A 		1.6
(-2.8)
A 		12
avr 2
(-2.8) 		11.4
(3) 		1.7
(-3) 		7.3
(0.5) 		1.7
(-3) 		5.5
(-0.6) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.2
(-3)
A 		0.6
(3)
A 		0.3
(-1.5)
A 		0.2
(-3)
A 		0
B 0.2
(-3)
A 		0.7
(3)
A 		0.2
(-3)
A 		0.3
(-1.8)
A 		1
C 0.2
(-3)
A 		1.2
(1.3)
A 		1.6
(3)
A 		0.5
(-1.7)
A 		1
avr 0.2
(-3) 		0.8
(3) 		0.7
(2) 		0.3
(-2) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.4
(-2.6)
A 		3.1
(2.3)
A 		0.2
(-3)
A 		2.9
(1.9)
A 		0.6
(-2.3)
A 		3.5
(3)
A 		3
B 0.8
(-2)
A 		4.2
(3)
A 		0.3
(-2.7)
A 		2.4
(0.4)
A 		0.4
(-2.6)
A 		0.1
(-3)
A 		4
C 0.6
(-2.5)
A 		4
(3)
A 		0.8
(-2.2)
A 		0.3
(-3)
A 		0.8
(-2.2)
A 		0.5
(-2.7)
A 		4
avr 0.6
(-2.6) 		3.8
(3) 		0.4
(-3) 		1.9
(-0.4) 		0.6
(-2.6) 		1.4
(-1.2) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181693_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4568
Sequence Type Exemplar sequence
Representative Public ID D2062.5 NCBI
Target Description D2062.5 /REP_DB=WormBase Gene ID /WP=CE09092 /TR=O16597 /GB=AAB66063.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061907(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061907 NCBI Caenorhabditis elegans D2062.5 (D2062.5) mRNA, complete cds. 11/11 A 
GENEFINDER00000009067 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2622525:2623507:1 11/11 None
D2062.5 ENSEMBL cdna:known chromosome:CEL140:II:2622664:2623427:1 gene:D2062.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_061908 1/11 Cross Hyb Matching Probes A B 
SNAP00000009053 8/11 Cross Hyb Matching Probes None
D2062.4 1/11 Cross Hyb Matching Probes A B 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2622662-2623426(+) 92.31 100.0
Public Domain and Genome References
Gene Title
Ensembl D2062.5
Entrez Gene 183955 Entrez gene
SwissProt O16597 EMBL-EBI
WormBase CE09092 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494308 D2062.5 [Caenorhabditis elegans] gb|AAB66063.1| Hypothetical protein D2062.5 [Caenorhabditis elegans] 1.0E-78
blast NP_494308 D2062.5 [Caenorhabditis elegans] gb|AAB66063.1| Hypothetical protein D2062.5 [Caenorhabditis elegans] 3.0E-73
blast NP_494309 D2062.4 [Caenorhabditis elegans] gb|AAB66066.2| Hypothetical protein D2062.4 [Caenorhabditis elegans] 4.0E-50
blast NP_494309 D2062.4 [Caenorhabditis elegans] gb|AAB66066.2| Hypothetical protein D2062.4 [Caenorhabditis elegans] 6.0E-49
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494308.1 1 52-74
D2062.5 1 52-74
GENEFINDER00000009067 2 22-39,82-104
Sequence
Target Sequence 
>C. ELEGANS:181693_AT
accgcttatcgacttttcttcgaattttcaatcattcctcagaatttttcataatgcaag
aatccgatgaataccagtcttacgaattcaacatttggctcatgacaaatgccatgctga
ttacaactgcgttcggcgcagcaatcgccattttcttgagaatgtggctcatgagacagc
tgaatcaatctctcattcacgcagctgctggcatggagactaccgcaaggattttgaaga
aagcgtgcctggacccaatgacagttgcagtgatggccgacgaaaagcgcgataaaaagg
ataccgatatttgcgatcaattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCGCTTATCGACTTTTCTTCGAAT 55 89 77 Antisense
CTTCGAATTTTCAATCATTCCTCAG 642 219 94 Antisense
CAATCATTCCTCAGAATTTTTCATA 562 181 105 Antisense
GAATCCGATGAATACCAGTCTTACG 257 329 136 Antisense
AGTCTTACGAATTCAACATTTGGCT 219 61 152 Antisense
GGCTCATGACAAATGCCATGCTGAT 141 539 173 Antisense
GCCATGCTGATTACAACTGCGTTCG 102 281 187 Antisense
CAACTGCGTTCGGCGCAGCAATCGC 627 187 200 Antisense
GTGGCTCATGAGACAGCTGAATCAA 257 491 240 Antisense
GCTGAATCAATCTCTCATTCACGCA 198 297 255 Antisense
GGATACCGATATTTGCGATCAATTC 555 509 375 Antisense
Sequence Source Affymetrix Proprietary Database