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[181692_at]

Description F44F4.10 /REP_DB=WormBase Gene ID /WP=CE00997 /TR=Q20408 /GB=CAA85459.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 34      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 5.2
(-3)
A 		42.6
(2.6)
A 		23.9
(-0.2)
A 		45.6
(3)
A 		40
B 7.9
(-3)
A 		25.7
(0.7)
A 		29.4
(1.5)
A 		36.5
(3)
A 		29
C 15.9
(-1.8)
A 		48.2
(3)
A 		8
(-3)
A 		11.3
(-2.5)
A 		40
avr 9.7
(-3) 		38.8
(3) 		20.4
(-0.8) 		31.1
(1.4) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 11.2
(-2.4)
A 		8.6
(-2.6)
A 		4
(-3)
A 		38.6
(-0.3)
A 		57.2
(1.1)
A 		81.7
(3)
A 		78
B 50.6
(-0.5)
A 		15.4
(-2.6)
A 		75.8
(0.9)
A 		8.2
(-3)
A 		46.7
(-0.8)
P 		111
(3)
A 		103
C 7.6
(-3)
A 		48.4
(0.7)
A 		39.7
(-0.1)
A 		22.2
(-1.7)
A 		18.5
(-2)
A 		73.4
(3)
A 		66
avr 23.1
(-3) 		24.1
(-2.9) 		39.8
(-1.5) 		23
(-3) 		40.8
(-1.4) 		88.7
(3) 		66
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1.9
(-3)
A 		9.2
(3)
A 		6.3
(0.6)
A 		6.7
(0.9)
A 		7
B 2.5
(-3)
A 		6.3
(1.3)
A 		6.8
(1.9)
A 		7.8
(3)
A 		5
C 5.3
(-1.3)
A 		13.9
(3)
A 		2.8
(-2.6)
A 		1.9
(-3)
A 		12
avr 3.2
(-3) 		9.8
(3) 		5.3
(-1.1) 		5.5
(-0.9) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 2.1
(-2.6)
A 		3
(-2.3)
A 		0.9
(-3)
A 		9.8
(-0.2)
A 		17.3
(2.2)
A 		19.9
(3)
A 		19
B 17.6
(-0.6)
A 		5.1
(-2.6)
A 		18.4
(-0.5)
A 		2.2
(-3)
A 		19
(-0.4)
P 		41.4
(3)
A 		39
C 2.8
(-3)
A 		14.8
(0.3)
A 		10.1
(-1)
A 		4.5
(-2.5)
A 		6
(-2.1)
A 		24.6
(3)
A 		22
avr 7.5
(-2.5) 		7.6
(-2.5) 		9.8
(-1.9) 		5.5
(-3) 		14.1
(-0.8) 		28.6
(3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181692_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3638
Sequence Type Exemplar sequence
Representative Public ID F44F4.10 NCBI
Target Description F44F4.10 /REP_DB=WormBase Gene ID /WP=CE00997 /TR=Q20408 /GB=CAA85459.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063949(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063949 NCBI Caenorhabditis elegans F44F4.10 (F44F4.10) mRNA, complete cds. 11/11 None
SNAP00000037189 ENSEMBL cdna:SNAP chromosome:CEL140:II:10915846:10917128:-1 11/11 None
GENEFINDER00000037198 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10915846:10917128:-1 11/11 None
F44F4.10 ENSEMBL cdna:known chromosome:CEL140:II:10915846:10917128:-1 gene:F44F4.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10915842-10917125(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F44F4.10
Entrez Gene 185752 Entrez gene
SwissProt Q20408 EMBL-EBI
WormBase CE00997 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA85459 Hypothetical protein F44F4.10 [Caenorhabditis elegans] ref|NP_496350.1| F44F4.10 [Caenorhabditis elegans] 1.0E-147
blast CAB03098 Hypothetical protein F42G4.6 [Caenorhabditis elegans] emb|CAA22519.1| Hypothetical protein F42G4.6 [Caenorhabditis elegans] ref|NP_496779.1| F42G4.6 [Caenorhabditis elegans] 1.0E-122
blast CAA22516 Hypothetical protein Y81G3A.1 [Caenorhabditis elegans] ref|NP_496780.1| Y81G3A.1 [Caenorhabditis elegans] 5.0E-80
Sequence
Target Sequence 
>C. ELEGANS:181692_AT
aaaccagcggacgacgagtacgtgaatcttctgctgccgcaaagcaaagaggaacaggtg
gctgagaagcttgcggacaagctgagaaagttggaggtgaaggagtcgaagggcaagcga
agaggaagtaaggagcgaaagaagaagaagccggagccagtagagagtacatatgagagc
ttggcctctattgaaggatccacgaacttctctggtccagttacgactgaatctttggag
agcaatgtgaaatgccaccatgcttcccagactgcctacatcggtgtgtacagctctgcg
gacgctgaagctcaggtcaaaaatcgtggagagttcgccttgtaccatcaattcgaggtc
ggcaaccgccttgatcatctcacggcgactcttccattgatgctcgtctactacaccacc
accaagaagcatcgtcactacccggttcggaaatctggagacaatggaacggttcagtat
tcggtggattgtggataccctatcgttcgcaaacacttctcaatcaatcaactcgtgctc
tactataaaacgttcggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACCAGCGGACGACGAGTACGTGA 527 125 238 Antisense
GGTGGCTGAGAAGCTTGCGGACAAG 440 499 294 Antisense
GAAGCCGGAGCCAGTAGAGAGTACA 278 345 384 Antisense
GAACTTCTCTGGTCCAGTTACGACT 84 351 441 Antisense
AAATCGTGGAGAGTTCGCCTTGTAC 88 119 558 Antisense
GTTCGCCTTGTACCATCAATTCGAG 455 441 570 Antisense
TCAATTCGAGGTCGGCAACCGCCTT 225 555 585 Antisense
CATCGTCACTACCCGGTTCGGAAAT 710 143 667 Antisense
TCGCAAACACTTCTCAATCAATCAA 116 601 744 Antisense
CAATCAATCAACTCGTGCTCTACTA 467 181 758 Antisense
GTGCTCTACTATAAAACGTTCGGAT 339 479 772 Antisense
Sequence Source Affymetrix Proprietary Database