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[181690_at]

Description F26F4.1 /REP_DB=WormBase Gene ID /WP=CE01257 /TR=Q19824 /GB=AAA91216.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 89      6grp_high1_10_10 > 99      4grp_highest_8_8 > 26      4grp_high_8_8 > 59      6grp_highest_nonorm > 96      6grp_total > 96      4grp_total > 60      6grp_highest_sub > In      6grp_total_sub > Increase      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 961
1 2 3 4 range
A 1049
(0.9)
P 		1003.2
(0.6)
P 		1358.6
(3)
P 		454.5
(-3)
P 		904
B 1090.4
(0.7)
P 		1182.4
(1.4)
P 		1395.3
(3)
P 		608.7
(-3)
P 		787
C 1050
(0.3)
P 		930.1
(-0.5)
P 		1415.2
(3)
P 		591.6
(-3)
P 		824
avr 1063.1
(0.7) 		1038.6
(0.5) 		1389.7
(3) 		551.6
(-3) 		838

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 473
1 2 3 4 5 6 range
A 699.3
(-3)
P 		1010.5
(3)
P 		702
(-2.9)
P 		776
(-1.5)
P 		925
(1.4)
P 		982.5
(2.5)
P 		311
B 763.1
(-1.9)
P 		703.5
(-2.6)
P 		673.2
(-3)
P 		996.8
(1.1)
P 		1072.4
(2.1)
P 		1146.3
(3)
P 		473
C 832.2
(-1.9)
P 		783.2
(-3)
P 		834.1
(-1.9)
P 		916.1
(-0)
P 		1053.5
(3)
P 		1033.6
(2.6)
P 		270
avr 764.9
(-2.5) 		832.4
(-1.2) 		736.4
(-3) 		896.3
(0) 		1017
(2.3) 		1054.1
(3) 		318
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 427
1 2 3 4 range
A 381.9
(3)
P 		217.8
(-0.1)
P 		355.2
(2.5)
P 		66.5
(-3)
P 		315
B 347.7
(3)
P 		292
(1.5)
P 		323.3
(2.3)
P 		129.7
(-3)
P 		218
C 347.6
(0.8)
P 		267.4
(-0.4)
P 		493.3
(3)
P 		99.8
(-3)
P 		394
avr 359.1
(2.4) 		259.1
(0.3) 		390.6
(3) 		98.7
(-3) 		292

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 307
1 2 3 4 5 6 range
A 128.9
(-3)
P 		359.4
(3)
P 		152.9
(-2.4)
P 		196.8
(-1.2)
P 		279.1
(0.9)
P 		239.2
(-0.1)
P 		231
B 265.5
(-0.8)
P 		234.2
(-1.4)
P 		163.5
(-3)
P 		264
(-0.8)
P 		435.7
(3)
P 		427.5
(2.8)
P 		272
C 308.5
(1.6)
P 		239
(-1)
P 		212.3
(-2)
P 		184.2
(-3)
P 		340.9
(2.8)
P 		346
(3)
P 		162
avr 234.3
(-1) 		277.5
(0.5) 		176.2
(-3) 		215
(-1.7) 		351.9
(3) 		337.6
(2.5) 		176
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181690_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7096
Sequence Type Exemplar sequence
Representative Public ID F26F4.1 NCBI
Target Description F26F4.1 /REP_DB=WormBase Gene ID /WP=CE01257 /TR=Q19824 /GB=AAA91216.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065633(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065633 NCBI Caenorhabditis elegans F26F4.1 (F26F4.1) mRNA, complete cds. 11/11 None
SNAP00000005757 ENSEMBL cdna:SNAP chromosome:CEL140:III:4912665:4913940:1 11/11 None
GENEFINDER00000005771 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4912665:4913940:1 11/11 None
F26F4.1 ENSEMBL cdna:known chromosome:CEL140:III:4912660:4914031:1 gene:F26F4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4912664-4913940(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F26F4.1
Entrez Gene 175658 Entrez gene
SwissProt Q19824 EMBL-EBI
WormBase CE01257 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:247365_AT expressed protein at
CANINE_2:CFAAFFX.17636.1.S1_AT similar to CG9853-PA cfa
DROSOPHILA_2:1632634_AT dm
DROSGENOME1:154062_AT dm
CHICKEN:GGA.8182.1.S1_AT similar to chromosome 7 open reading frame 20; CGI-20 protein; H_NH1244M04.5 gga
CHICKEN:GGAAFFX.12219.1.S1_S_AT similar to chromosome 7 open reading frame 20; CGI-20 protein; H_NH1244M04.5 gga
HG-U133_PLUS_2:223811_S_AT chromosome 7 open reading frame 20 hs
HG-U133B:223811_S_AT chromosome 7 open reading frame 20 hs
HU35KSUBA:D82603_AT chromosome 7 open reading frame 20 hs
HU35KSUBD:RC_AA259124_S_AT chromosome 7 open reading frame 20 hs
U133_X3P:G13097677_3P_A_AT chromosome 7 open reading frame 20 hs
U133_X3P:HS.107387.1.S2_3P_AT chromosome 7 open reading frame 20 hs
HG-U133_PLUS_2:224808_S_AT chromosome 7 open reading frame 20 hs
HG-U133B:224808_S_AT chromosome 7 open reading frame 20 hs
HG-U95C:49144_AT chromosome 7 open reading frame 20 hs
U133_X3P:HS.107387.2.A1_3P_A_AT Chromosome 7 open reading frame 20 hs
U133_X3P:HS.107387.1.A1_3P_AT Chromosome 7 open reading frame 20 hs
HG-U133_PLUS_2:224816_AT Chromosome 7 open reading frame 20 hs
HG-U133B:224816_AT Chromosome 7 open reading frame 20 hs
HG-U133_PLUS_2:227588_S_AT Chromosome 7 open reading frame 20 hs
HG-U133B:227588_S_AT Chromosome 7 open reading frame 20 hs
HG-U95C:49143_S_AT Chromosome 7 open reading frame 20 hs
HG-U95E:87159_AT Chromosome 7 open reading frame 20 hs
HU35KSUBA:AA027760_AT Chromosome 7 open reading frame 20 hs
MOE430A:1451700_A_AT RIKEN cDNA 1110007L15 gene mm
MOUSE430A_2:1451700_A_AT RIKEN cDNA 1110007L15 gene mm
MOUSE430_2:1451700_A_AT RIKEN cDNA 1110007L15 gene mm
MU11KSUBA:AA474352_S_AT RIKEN cDNA 1110007L15 gene mm
MG-U74AV2:99447_AT RIKEN cDNA 1110007L15 gene mm
MG-U74BV2:164440_F_AT RIKEN cDNA 1110007L15 gene mm
MOE430A:1428528_AT RIKEN cDNA 1110007L15 gene mm
MOUSE430A_2:1428528_AT RIKEN cDNA 1110007L15 gene mm
MOUSE430_2:1428528_AT RIKEN cDNA 1110007L15 gene mm
MU19KSUBB:TC34144_AT RIKEN cDNA 1110007L15 gene (1110007L15Rik), mRNA mm
RG-U34B:RC_AA943931_AT similar to RIKEN cDNA 1110007L15 (predicted) rn
RG-U34B:RC_AI070195_AT similar to RIKEN cDNA 1110007L15 (predicted) rn
RG-U34C:RC_AI103738_AT similar to RIKEN cDNA 1110007L15 (predicted) rn
RAE230A:1376016_AT similar to RIKEN cDNA 1110007L15 (predicted) rn
RAT230_2:1376016_AT similar to RIKEN cDNA 1110007L15 (predicted) rn
RAE230A:1372596_AT similar to RIKEN cDNA 1110007L15 (predicted) rn
RAT230_2:1372596_AT similar to RIKEN cDNA 1110007L15 (predicted) rn
RAE230A:1378039_AT Similar to RIKEN cDNA 1110007L15 (predicted) rn
RAT230_2:1378039_AT Similar to RIKEN cDNA 1110007L15 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAA91216 Hypothetical protein F26F4.1 [Caenorhabditis elegans] ref|NP_498034.1| F26F4.1 [Caenorhabditis elegans] 0.0
blast CAE71298 Hypothetical protein CBG18187 [Caenorhabditis briggsae] 1.0E-145
blast AAH74468 MGC84763 protein [Xenopus laevis] 1.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR007317 EMBL-EBI Protein of unknown function DUF410 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:181690_AT
gccgtcgatcatgtggaacttgccaaaaatcatttcttgctttccgatgactttaaatca
ttcgccaatttccttcaccaagaatatgaaagctttaaacaaaaagagtctgaaccagaa
gtcattattgttgaagccgtttttcagtcactctgtctcgatcgtttcccatttgccgta
tctcttttcactgaatacgtggctcctgccaagtatccgttcacaaagccattgctcaat
ttccagcacatattatttgacgttattgagacggaaaaccaacctcaatattcggagctc
acctctagctatcaaacagaattgaaaaggtccctcgcattcattggatatctcacgaga
attgggaagctctatttcggaattcgtgataatcaatgcatgagcggcggtctgggtgga
cttttttcaggacttcttggtggtcaaaaagaggaagaaactgcaacttctcatatcact
tctcggactccagctcgtcaaaagccagctgccatgtctcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCGTCGATCATGTGGAACTTGCCA 5 283 478 Antisense
ATTTCTTGCTTTCCGATGACTTTAA 117 17 509 Antisense
TAAATCATTCGCCAATTTCCTTCAC 552 641 531 Antisense
AATACGTGGCTCCTGCCAAGTATCC 272 173 671 Antisense
AAGTATCCGTTCACAAAGCCATTGC 648 155 688 Antisense
ATATTCGGAGCTCACCTCTAGCTAT 460 19 765 Antisense
AGGTCCCTCGCATTCATTGGATATC 398 55 805 Antisense
CAATGCATGAGCGGCGGTCTGGGTG 550 181 871 Antisense
GGACTTTTTTCAGGACTTCTTGGTG 61 525 895 Antisense
AAACTGCAACTTCTCATATCACTTC 265 127 935 Antisense
TCAAAAGCCAGCTGCCATGTCTCAA 3 631 975 Antisense
Sequence Source Affymetrix Proprietary Database